Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g2452 | ATGGCTGAGGTTCATAGTAGCAACACGGATGGAATTAAGCTTTTTGGCACTATGATTCATTTACAGACAAGAAAAATGAAGGAGGAACCGGAGAAAGGCGGCGGTGAAGGTGATGAAACAGAGATGAAGAGGCCAGAAAAAATTATTCCATGCCCAAGATGTAAGAGTATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCTAGACATTTCTGCAAGGGTTGCCAAAGGTACTGGACGGCCGGTGGGGCGCTCCGGAACGTACCCATCGGAGCTGGCCGCCGGAGAACCAAGCCGCCGCCTAATTGCCGGACCCTTTCCGGCGAGCTGCCAGAGGATTATGGGCAGCTTTACGATGCGGCTTCTGGGATTATTCATCAGCTTGAATTAGATGCGGTGGAAGGGTGGCGTCTCACGTTGGCGGAACAGGATTTTAGCTCGGTTTTTCCTTTCAAACGCCGGAAGATTATCGGTCAACACGGTCAAACGTCTTAA | 507 | 49.11 | MAEVHSSNTDGIKLFGTMIHLQTRKMKEEPEKGGGEGDETEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKPPPNCRTLSGELPEDYGQLYDAASGIIHQLELDAVEGWRLTLAEQDFSSVFPFKRRKIIGQHGQTS | 168 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 35004447 | 35004953 | - | ClG42_01g0245200.10 | Clacu01g2452 | 241836 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g2452 | 168 | MobiDBLite | consensus disorder prediction | 21 | 44 | - | - | |
Clacu01g2452 | 168 | ProSiteProfiles | Zinc finger Dof-type profile. | 49 | 103 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Clacu01g2452 | 168 | ProSitePatterns | Zinc finger Dof-type signature. | 51 | 87 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Clacu01g2452 | 168 | PANTHER | CYCLIC DOF FACTOR 2 | 27 | 110 | IPR045174 | GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu01g2452 | 168 | MobiDBLite | consensus disorder prediction | 22 | 44 | - | - | |
Clacu01g2452 | 168 | Pfam | Dof domain, zinc finger | 47 | 102 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g2452 | Clacu-Chr1:35004447 | Clacu10g1579 | Clacu-Chr10:29094752 | 4.60E-31 | dispersed | |
Clacu01g2452 | Clacu-Chr1:35004447 | Clacu03g0770 | Clacu-Chr3:8680427 | 2.60E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47128 | PF02701 | zf-Dof | 1.60E-31 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g2452 | - | - | - | 0.0 |