Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2452 ATGGCTGAGGTTCATAGTAGCAACACGGATGGAATTAAGCTTTTTGGCACTATGATTCATTTACAGACAAGAAAAATGAAGGAGGAACCGGAGAAAGGCGGCGGTGAAGGTGATGAAACAGAGATGAAGAGGCCAGAAAAAATTATTCCATGCCCAAGATGTAAGAGTATGGACACCAAATTCTGTTACTTCAACAATTACAATGTTAATCAGCCTAGACATTTCTGCAAGGGTTGCCAAAGGTACTGGACGGCCGGTGGGGCGCTCCGGAACGTACCCATCGGAGCTGGCCGCCGGAGAACCAAGCCGCCGCCTAATTGCCGGACCCTTTCCGGCGAGCTGCCAGAGGATTATGGGCAGCTTTACGATGCGGCTTCTGGGATTATTCATCAGCTTGAATTAGATGCGGTGGAAGGGTGGCGTCTCACGTTGGCGGAACAGGATTTTAGCTCGGTTTTTCCTTTCAAACGCCGGAAGATTATCGGTCAACACGGTCAAACGTCTTAA 507 49.11 MAEVHSSNTDGIKLFGTMIHLQTRKMKEEPEKGGGEGDETEMKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRRTKPPPNCRTLSGELPEDYGQLYDAASGIIHQLELDAVEGWRLTLAEQDFSSVFPFKRRKIIGQHGQTS 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35004447 35004953 - ClG42_01g0245200.10 Clacu01g2452 241836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2452 168 MobiDBLite consensus disorder prediction 21 44 - -
Clacu01g2452 168 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu01g2452 168 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu01g2452 168 PANTHER CYCLIC DOF FACTOR 2 27 110 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g2452 168 MobiDBLite consensus disorder prediction 22 44 - -
Clacu01g2452 168 Pfam Dof domain, zinc finger 47 102 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2452 Clacu-Chr1:35004447 Clacu10g1579 Clacu-Chr10:29094752 4.60E-31 dispersed
Clacu01g2452 Clacu-Chr1:35004447 Clacu03g0770 Clacu-Chr3:8680427 2.60E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47128 PF02701 zf-Dof 1.60E-31 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2452 - - - 0.0