Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2460 ATGGCCGACCGGCCGGACCCTGACAAGAAGACCGAAACCACCAGGAAGGACATGCCCGCGCTTCTTTTGGGCCGATACGAGATCGGGAAGCTCCTTGGCCATGGGACCTTCGCTAAGGTCTACCATGCCCGAAACATCAAGACCAACGAAAGCGTCGCCATTAAAGTCATCGACAAGGAGAAGATCCTCAAGGGTGGTTTAATCGCCCACATCAAACGCGAGATCTCAATCCTCCGCCGTGTTCGACACCCCAATATTGTGCAACTCTTCGAGGTCATGGCCACCAAGGCCAAGATCTACTTCGTTATGGAATATGTCCGCGGCGGCGAGCTTTTCAAGAAGGTTTCCAAGGGCCGATTGAAGGAAGAGGTTGCACGAAAGTACTTTCAGCAATTAATCTCTGCCGTTGCTTTTTGCCACGCGCGTGGTGTTTATCATCGGGACCTTAAACCGGAGAATTTGCTGCTCGATGAGAATGGGAATCTTAAGGTCTCCGATTTTGGCCTCAGCGCCGTCTCCGATCAAATTCGACAAGATGGGTTGTTTCATACTTTTTGTGGTACGCCGGCGTATGTGGCTCCGGAGGTTTTGGCCCGGAAAGGGTATGAGGCTGCGAAGGTCGATATTTGGTCATGTGGGGTTATTCTGTTTGTTCTGATGGCGGGTTATTTACCCTTCCACGACCAAAACATTATGGCAATGTATAAGAAGATTTACAAGGGGGAGTTTCGGTGTCCGAGATGGTTCTCGCCGGAGCTAATTCGACTCCTAACTCGTCTTCTAGATACAAATCCCGAAACCCGTTTCACAATTCCTGAAATCATGGAGAACAAATGGTTCAAAAAGGGGTATAAACATATCAAATTCTACATCGAAGACGATAAGGTCTGCAGCGTTGAGGACGGTAGTGATGATGTCGATTCCTTGTCGGATCAATCACAATCGGAATCGGATTCTGAAATTATTGAGACCAGAAGAAAGGTTACCTCACTCCCAAGACCCGCGAGTTTGAATGCATTTGATATAATTTCGTTTTCACCCGGATTTGATCTTTCTGGGTTGTTTGAGGATGGAGGGGAAGAGGCAAGATTTGTGTCCAGTGCTCCGGTGTCGAAGATTATATCGAAATTAGAGGAGATTGCAAAATTGGTGAGTTTTACTGTGAGGAAGAAGGATTGCAGGGTTAGTTTAGAGGGGTCACGGGAAGGAGTAAAAGGGCCATTGACAATCGCGGCCGAGGTATTCGAGTTGACCCCGAAATTGGTGATGGTGGAGGTGAAGAGGAAAGGGGGAGATAAAGCAGAGTATGAACAATTCTGTAATAATGAACTGAAGCCAGCATTGTTGAATCTGAAGATGGAAGAGTCTGCTGCTCCATCACATATACCATCAGATACTGAATGA 1404 47.51 MADRPDPDKKTETTRKDMPALLLGRYEIGKLLGHGTFAKVYHARNIKTNESVAIKVIDKEKILKGGLIAHIKREISILRRVRHPNIVQLFEVMATKAKIYFVMEYVRGGELFKKVSKGRLKEEVARKYFQQLISAVAFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYEAAKVDIWSCGVILFVLMAGYLPFHDQNIMAMYKKIYKGEFRCPRWFSPELIRLLTRLLDTNPETRFTIPEIMENKWFKKGYKHIKFYIEDDKVCSVEDGSDDVDSLSDQSQSESDSEIIETRRKVTSLPRPASLNAFDIISFSPGFDLSGLFEDGGEEARFVSSAPVSKIISKLEEIAKLVSFTVRKKDCRVSLEGSREGVKGPLTIAAEVFELTPKLVMVEVKRKGGDKAEYEQFCNNELKPALLNLKMEESAAPSHIPSDTE 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35068205 35069608 - ClG42_01g0246000.10 Clacu01g2460 241844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2460 467 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524(InterPro)
Clacu01g2460 467 Pfam NAF domain 334 390 IPR004041 GO:0007165(InterPro)
Clacu01g2460 467 FunFam Non-specific serine/threonine protein kinase 16 326 - -
Clacu01g2460 467 SUPERFAMILY Protein kinase-like (PK-like) 22 327 IPR011009 -
Clacu01g2460 467 CDD STKc_SnRK3 25 279 - -
Clacu01g2460 467 ProSiteProfiles Protein kinase domain profile. 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2460 467 ProSiteProfiles NAF domain profile. 332 356 IPR018451 GO:0007165(InterPro)
Clacu01g2460 467 Gene3D Transferase(Phosphotransferase) domain 1 17 333 - -
Clacu01g2460 467 Gene3D Kinase associated domain 1, KA1 334 452 - -
Clacu01g2460 467 SMART serkin_6 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2460 467 CDD CIPK_C 338 448 - -
Clacu01g2460 467 FunFam Non-specific serine/threonine protein kinase 18 105 - -
Clacu01g2460 467 MobiDBLite consensus disorder prediction 302 322 - -
Clacu01g2460 467 FunFam Non-specific serine/threonine protein kinase 334 452 - -
Clacu01g2460 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2460 467 Pfam Protein kinase domain 26 280 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2460 467 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 446 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2460 Clacu-Chr1:35068205 Clacu02g1747 Clacu-Chr2:30983019 3.20E-146 dispersed
Clacu01g2460 Clacu-Chr1:35068205 Clacu03g0759 Clacu-Chr3:8455200 2.80E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73295 PF00069 Pkinase 2.70E-76 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2460 - - - 0.0