Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2462 ATGTCAGAAATCCAACGGCTCATCATTGCCACGCTCATCTGCGGTCACAGCCAAGATGGAGAAATTATGGTCTTCACCACACAATGGATTTCCTCAGTCACAATCTCAGCCATTAAAAACACACACATCTCGAGATTTCCTGGTCTTGCGCGAGTTCTTGCGTCTTACACTTTGGCAGCTCTCGCTTTCGTTTTCCCTCCCCCTGCTTGTTTGGTCATGGAAGTTGTTAGAGTGGTTCCGTCGCTGTTCTTCCTCATCTGGGTGGTCTCTGCCTCAGACAGTCATTTGTCTCCCAAAGGAGTAAACTATGAAGTGGCGGCTTTGATATCAGTGAAGAGTAGGATAAGGGACGAGCGGGGAGTGATGCAAGGATGGGACATAAATTCGGTTGATCCATGCACCTGGAATATGGTTGCTTGCTCTGCTGAGAGCTTTGTGATTTCTCTTGAGATGCCAAATATGGGCTTATCTGGAACGCTTTCCCCTAGCATTGGGAACCTGAGTCATCTTCGGACAATGTTGTTGCAAAATAATGAGTTATCTGGTCCAATCCCAGATGATATAGGAGAACTTTCAGAGCTTCAGACTCTTGACCTTTCTAACAACCAGTTTGTAGGCGGGATTCCAAGTTCTTTGGGGTTTCTCACTCATTTAAATTACTTGAAGCTCAGTAGTAACAAGTTAAGTGGACCAATACCGGAATCTGTTGCAAATATCTCAGGCCTCTCCTTTCTAGATTTATCGAATAATAATCTCAGTGGTCCAACTCCAAGAATACTTGCCAAAGAGTACAGTGTTGCAGGGAATAGCTTCCTTTGTGCATCTTCATCATCTAAATTTTGTGGTGTACTTCCAAAGCCAGTTAACGAAACTGGTTCGTCCCAGAAATATAATGGCCGTCATCACATGGTTCTTTCCATAGCACTAATTGTCAGTTTCACATTTGTGCTTTCTGTTGTGTTACTTGTTGGCTGGGTGCATTGTTATAGATCTCATCTTGTCTTCACATCCTACGTGCAACAAGATTATGAATTTGATATAGGTCATCTGAAAAGGTTTACATTCCGTGAACTACAAAAGGCAACATGTAATTTTAGTCCCCAAAACATCCTGGGACAGGGTGGTTTTGGAGTAGTTTATAAAGGTTATCTTCCAAATGGGACATATGTTGCTGTCAAGAGACTGAAAGATCCGAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAAATGATTGGCTTAGCAGTGCACCGCAATCTCTTGCGTCTGTATGGCTTTTGTATGACGCCAGATGAGAGATTGCTTGTTTATCCATATATGCCAAATGGGAGTGTTGCTGACCGTCTTAGAGATGCAGGCCAAGAGAAGCCTTCATTGAATTGGAACAGAAGATTGCGTATTGCCCTTGGTGCAGCTCGTGGACTCCTATACTTGCATGAGCAGTGTAACCCAAAAATTATTCACCGGGATGTGAAAGCTGCAAATATTCTTCTAGATGAAAGCTTTGAAGCCGTGGTTGGGGATTTCGGTCTGGCAAAGATGTTAGATAGGAGAGATTCACATGTTACTACTGCAGTTAGGGGCACAGTGGGACATATTGCCCCGGAATATCTTTCAACTGGACAATCTTCAGAAAAGACTGATGTTTTTGGATTTGGCATATTGGTTCTGGAACTCTTGACAGGGCAAAAAGCACTTGATGCTGGAAATGGTCAAATTCGAAAGGGAATGATCCTCGAATGGGTTAGAACATTACATGAGGAAAAGAGGTTAGATGTGCTGGTGGACAGGGATCTTAAAGGATGTTTTGATGCAATGGAGCTGGAAAAAGCTGTAGAGTTGGCTCTGCAGTGTACTCAATCGCATCCACAACTTAGACCAAAGATGTCCGAGATCCTGAAGATTCTAGAAGGTCTCGTTGGACAGTCGAGTCAAATGGAGGAATCACCAGGTGGAGCAAGTCTTTATGAGGATAGAACTCACAGTTTCTCCAGAAATTACAGTGATATTCATGAAGAATCTTCATTTGTTGTTGAAGCCATGGAGCTTTCCGGACCTCGATGA 2067 43.3 MSEIQRLIIATLICGHSQDGEIMVFTTQWISSVTISAIKNTHISRFPGLARVLASYTLAALAFVFPPPACLVMEVVRVVPSLFFLIWVVSASDSHLSPKGVNYEVAALISVKSRIRDERGVMQGWDINSVDPCTWNMVACSAESFVISLEMPNMGLSGTLSPSIGNLSHLRTMLLQNNELSGPIPDDIGELSELQTLDLSNNQFVGGIPSSLGFLTHLNYLKLSSNKLSGPIPESVANISGLSFLDLSNNNLSGPTPRILAKEYSVAGNSFLCASSSSKFCGVLPKPVNETGSSQKYNGRHHMVLSIALIVSFTFVLSVVLLVGWVHCYRSHLVFTSYVQQDYEFDIGHLKRFTFRELQKATCNFSPQNILGQGGFGVVYKGYLPNGTYVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDAGQEKPSLNWNRRLRIALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKMLDRRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILVLELLTGQKALDAGNGQIRKGMILEWVRTLHEEKRLDVLVDRDLKGCFDAMELEKAVELALQCTQSHPQLRPKMSEILKILEGLVGQSSQMEESPGGASLYEDRTHSFSRNYSDIHEESSFVVEAMELSGPR 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35090008 35094111 + ClG42_01g0246200.10 Clacu01g2462 241846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2462 688 Gene3D Transferase(Phosphotransferase) domain 1 441 649 - -
Clacu01g2462 688 Pfam Protein kinase domain 368 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2462 688 Pfam Leucine rich repeat N-terminal domain 102 141 IPR013210 -
Clacu01g2462 688 Gene3D Ribonuclease Inhibitor 101 283 IPR032675 -
Clacu01g2462 688 SUPERFAMILY L domain-like 103 263 - -
Clacu01g2462 688 SUPERFAMILY Protein kinase-like (PK-like) 347 638 IPR011009 -
Clacu01g2462 688 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 81 688 - -
Clacu01g2462 688 ProSiteProfiles Protein kinase domain profile. 365 641 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2462 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2462 688 SMART serkin_6 365 636 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2462 688 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515(InterPro)
Clacu01g2462 688 Pfam Leucine Rich Repeat 194 215 IPR001611 GO:0005515(InterPro)
Clacu01g2462 688 Pfam Leucine Rich Repeat 169 191 IPR001611 GO:0005515(InterPro)
Clacu01g2462 688 Pfam Leucine Rich Repeat 242 261 IPR001611 GO:0005515(InterPro)
Clacu01g2462 688 ProSitePatterns Protein kinases ATP-binding region signature. 371 393 IPR017441 GO:0005524(InterPro)
Clacu01g2462 688 Gene3D Phosphorylase Kinase; domain 1 335 440 - -
Clacu01g2462 688 FunFam Putative LRR receptor-like serine/threonine-protein kinase 101 283 - -
Clacu01g2462 688 FunFam Somatic embryogenesis receptor-like kinase 1 441 652 - -
Clacu01g2462 688 FunFam Somatic embryogenesis receptor kinase 1 334 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2462 Clacu-Chr1:35090008 Clacu08g1943 Clacu-Chr8:28435414 1.20E-157 dispersed
Clacu05g2080 Clacu-Chr5:29641462 Clacu01g2462 Clacu-Chr1:35090008 5.50E-37 dispersed
Clacu06g1699 Clacu-Chr6:27661850 Clacu01g2462 Clacu-Chr1:35090008 6.20E-60 dispersed
Clacu01g2462 Clacu-Chr1:35090008 Clacu11g0656 Clacu-Chr11:6304090 6.10E-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73297 PF00069 Pkinase 1.60E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2462 - - - 0.0