Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2485 ATGGCGAACCCAGAATCCGCCCCTATCCAACCCTCTGAAGGGGAAAAGAACGTGTATTCTGTGTGGGCTCTTCCTCCGGAAGATGTGACGGCCAGAATCAAGAACCTCATGAACAGCCTCATATCCGAGTTCGGCGGTCCCCAATTCGAGCCACATATCACCGTTGTTGGGGCAATCCGTCTCACCCCTGACGATGCCCTCAACAAATTCCGCTCCGCTTGCCAGGGGCTCAAGGCTTATCAAGCCACCGTCGATCATGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACTGAGGTGGTGGAGACTAGTTCACATTGCTGTGCACATTTTGGTTACAAAAACTCTACCCCTTACATGCCGCATATGAGCCTACTGTATGCCAACATATCAGATGAAAAAAAGAAGCAAGCAAAAGATATAGCAGACAAGCTTGATGAAGCCGTGAATGGCCTGAAGTTCCCAATCACTCGACTTGCACTGTACAAAACAGACACTGAGGATCAAACTCTAAAGTCCTGGGAGAAAATTGCAGAACACGATCTTCCTTCAAGGAGGAAAAACCAAACTTCATTGCTGAAGGAAGATTACAGACATTACTGCATGCTCTTCCATTTGGTGAAAAGATTGCAAATGCTGAGATACCCTTTACAGCATCAGAAGCCTACAAAAACAGTCATGGATGCAATGAAGAGTCCAGTGAGGTTTAAGTTGGGGAAACAGTCGTCCCTGGCGCCGGATGGGCATCTCGAAGATTTGGAGGAGCTAGTCAAGCAGGACCAAACTGAGGAGGGGATAGATTCGAGGGTGAGGTTGATGTACTTGGCCAATGAAGGTGATTTGGAAGGGATTAATGAACTGTTGGAATCGGGAGTCGATGTCAATTTCCATGATATCGACAACCGGACGGCTCTGCATATTGCTGCTTGCCAGGGATTCGCCGACGTTGTCGCTTTGTTGCTCGAACGTGGCGCTGAAGTTGACTCCAAAGATCGCTGGGGGAGCACGCCTCTTAGGGATGCTGTACATTACAAAAACCACGATGTGATCAAACTTCTGGAGAAGCATGGTGCAAAGCCTCCGGTGGCCCCCATGCTCGTCAAGAATGCCCGTGAAGTTCCAGATTATGAAATTGATCCTAAGGAACTTGATTTTACTAACAGTGTGAACATTACCAAGGGAACATTCCGCAAAGCATCTTGGCGTGGAACTGAGGTTGCTGTGAAAGAGCTTGGAGAAGATCTATTCACTGATGAGGATAAAGTGAGGGCTTTCAGAGATGAGCTTGCATTGCTTCAGAAAATACGACACCCCAATGTTGTCCAGTTTCTTGGTGCTGTTACTCAAAGTTGGCCGATGATGATCGTTACAGAATATTTACCAAAGGGAGATCTAGGAGCATTATTGAGTAGAAAAAGAGAAATAAAAACAATGACGGTTGTGAGACTTGCCCTTGATATTGCAAGGGGGATGAATTATTTGCATGAGAACAAGCCAACACCAATTATTCATCGTAATCTTGAGCCTTCAAATATTCTGAGGGATGATTCTGGCCACCTGAAAGTAGCAAATTTTGGAGTTAGCAAGTTATTGAAAGTTAAAGAAGATACACCTTCGACTCATTCAGAGACTTCACGAAGATATGAAGCTCCCGAGGTTTTCAAAAATGAAGAATATGACACAAAGGTGGATGTGTTTTCTTTTGCTTTGATTTTACAAGAGATGATTGAAGGCTGTCCTCCATTTCCTGACAAGGCAGATAGTGAAGTTCCTAAATTGTATGCAGCAGGAGAACGTCCCCCATTTAGAGCATCACTTAAACGTTATGCAAATGGACTAAAAGAGCTAATTGAAGAATGTTGGAATGAGAAGCCAAATAGTAGACCAACTTTTAGGCAGATAATAACCCAGCTGGAATTCATTTACAACAGATTCGGTCATAAGAGGCGCTGGAAGGTCAGGCCATTGAAATGCTTCCAGAATATTGAGGCAATGTTGAAGAGAGATCGTTCCCGTCGAAGCAGTTTCAATCTTTCGTCACATTCTTCTGCCAGCAGTATATGA 2085 44.75 MANPESAPIQPSEGEKNVYSVWALPPEDVTARIKNLMNSLISEFGGPQFEPHITVVGAIRLTPDDALNKFRSACQGLKAYQATVDHVSTGTFFYQCVFLLIHPTTEVVETSSHCCAHFGYKNSTPYMPHMSLLYANISDEKKKQAKDIADKLDEAVNGLKFPITRLALYKTDTEDQTLKSWEKIAEHDLPSRRKNQTSLLKEDYRHYCMLFHLVKRLQMLRYPLQHQKPTKTVMDAMKSPVRFKLGKQSSLAPDGHLEDLEELVKQDQTEEGIDSRVRLMYLANEGDLEGINELLESGVDVNFHDIDNRTALHIAACQGFADVVALLLERGAEVDSKDRWGSTPLRDAVHYKNHDVIKLLEKHGAKPPVAPMLVKNAREVPDYEIDPKELDFTNSVNITKGTFRKASWRGTEVAVKELGEDLFTDEDKVRAFRDELALLQKIRHPNVVQFLGAVTQSWPMMIVTEYLPKGDLGALLSRKREIKTMTVVRLALDIARGMNYLHENKPTPIIHRNLEPSNILRDDSGHLKVANFGVSKLLKVKEDTPSTHSETSRRYEAPEVFKNEEYDTKVDVFSFALILQEMIEGCPPFPDKADSEVPKLYAAGERPPFRASLKRYANGLKELIEECWNEKPNSRPTFRQIITQLEFIYNRFGHKRRWKVRPLKCFQNIEAMLKRDRSRRSSFNLSSHSSASSI 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35250137 35258467 + ClG42_01g0248500.10 Clacu01g2485 241869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2485 694 Gene3D Phosphorylase Kinase; domain 1 384 467 - -
Clacu01g2485 694 Gene3D Cyclic phosphodiesterase 12 197 - -
Clacu01g2485 694 Gene3D Transferase(Phosphotransferase) domain 1 468 690 - -
Clacu01g2485 694 ProSiteProfiles Ankyrin repeat profile. 307 339 IPR002110 GO:0005515(InterPro)
Clacu01g2485 694 FunFam Cyclic phosphodiesterase 13 192 - -
Clacu01g2485 694 SUPERFAMILY Protein kinase-like (PK-like) 401 649 IPR011009 -
Clacu01g2485 694 Pfam Protein tyrosine and serine/threonine kinase 397 645 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2485 694 Pfam 2'-5' RNA ligase superfamily 48 173 - -
Clacu01g2485 694 SUPERFAMILY Ankyrin repeat 254 368 IPR036770 -
Clacu01g2485 694 Gene3D - 246 379 IPR036770 -
Clacu01g2485 694 SUPERFAMILY LigT-like 16 189 IPR009097 -
Clacu01g2485 694 ProSiteProfiles Ankyrin repeat region circular profile. 307 339 - -
Clacu01g2485 694 SMART ANK_2a 307 336 IPR002110 GO:0005515(InterPro)
Clacu01g2485 694 SMART ANK_2a 274 303 IPR002110 GO:0005515(InterPro)
Clacu01g2485 694 SMART ANK_2a 340 369 IPR002110 GO:0005515(InterPro)
Clacu01g2485 694 FunFam serine/threonine-protein kinase STY46-like 385 468 - -
Clacu01g2485 694 ProSiteProfiles Protein kinase domain profile. 357 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2485 694 Pfam Ankyrin repeats (3 copies) 279 367 IPR002110 GO:0005515(InterPro)
Clacu01g2485 694 CDD STKc_MAP3K-like 398 645 - -
Clacu01g2485 694 FunFam Integrin-linked protein kinase family 256 383 - -
Clacu01g2485 694 FunFam Os01g0748600 protein 378 665 - -
Clacu01g2485 694 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 276 646 IPR051681 GO:0004674(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2485 Clacu-Chr1:35250137 Clacu09g1433 Clacu-Chr9:20259546 1.40E-81 dispersed
Clacu01g2485 Clacu-Chr1:35250137 Clacu02g1878 Clacu-Chr2:32268201 4.00E-129 wgd
Clacu01g2485 Clacu-Chr1:35250137 Clacu03g0733 Clacu-Chr3:8172960 7.50E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73298 PF07714 PK_Tyr_Ser-Thr 3.10E-53 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2485 - - - 0.0