Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2487 ATGTCCAAGCCTTATCAGTCACCACTCACAAGAATGATTAGGGGAAAAGGAAAGGGAGATTTCATAAAGACAGCAAACAGCCCTTCTTTTTGTTCTGTTTTAAAAGTTCCTTCTTCAACCAGCTCTTTTCCTCATCAGCCAAAAGAAAATCTTAGATTCTCACCTTCTGATTGTGCTGCTCATTTCACCTGTAAGTTGCAAATAAAGGGGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGAAGAAATGGGTTGCTCAAAAAAGCGTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATCGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACAATTGATAGGTACAAGAAGGCATCCTCAGATTCCACCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTCCGAGTTCAGATTGGTAACTTACAGAACTCAAACAGGAACATGTTGGGCGAGTCTTTAAGTTCTTTGAGTGTAAAAGATCTGAGAAGCCTGGAGAGCAAACTTGAGAAAGGAATTAGCAGAATTAGGTCCAAAAAGAATGAACTCCTCTTTGCTGAAATTGAGTATATGCGAAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCTCATCCATACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAATATCCACGCCAAGACAACATGGCTCTTCACACTCTGATTGGTGGATTGGATTATATTATAAGGAGTGCTGGCCATATGCCGATTGAAAGTCTCAACTTTCTCTGA 987 40.73 MSKPYQSPLTRMIRGKGKGDFIKTANSPSFCSVLKVPSSTSSFPHQPKENLRFSPSDCAAHFTCKLQIKGFQNQEEKMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDSTNTGSTSEANTQFYQQEAAKLRVQIGNLQNSNRNMLGESLSSLSVKDLRSLESKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALHTLIGGLDYIIRSAGHMPIESLNFL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35266813 35273425 + ClG42_01g0248700.10 Clacu01g2487 241871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2487 328 Gene3D - 98 179 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g2487 328 ProSiteProfiles K-box domain profile. 172 262 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu01g2487 328 FunFam agamous-like MADS-box protein AGL11 98 181 - -
Clacu01g2487 328 PRINTS MADS domain signature 88 108 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g2487 328 PRINTS MADS domain signature 108 123 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g2487 328 PRINTS MADS domain signature 123 144 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g2487 328 CDD MADS_MEF2_like 87 161 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu01g2487 328 PANTHER SERUM RESPONSE FACTOR HOMOLOG 86 281 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu01g2487 328 ProSiteProfiles MADS-box domain profile. 86 146 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g2487 328 Pfam K-box region 168 256 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu01g2487 328 Coils Coil 209 229 - -
Clacu01g2487 328 SMART madsneu2 86 145 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g2487 328 SUPERFAMILY SRF-like 87 163 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g2487 328 ProSitePatterns MADS-box domain signature. 88 142 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g2487 328 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 95 142 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1891 Clacu-Chr1:31052607 Clacu01g2487 Clacu-Chr1:35266813 8.90E-36 dispersed
Clacu01g2487 Clacu-Chr1:35266813 Clacu08g0058 Clacu-Chr8:1344694 7.60E-70 dispersed
Clacu04g0376 Clacu-Chr4:13905871 Clacu01g2487 Clacu-Chr1:35266813 4.90E-32 transposed
Clacu10g1213 Clacu-Chr10:24916609 Clacu01g2487 Clacu-Chr1:35266813 1.10E-25 transposed
Clacu01g2487 Clacu-Chr1:35266813 Clacu02g1880 Clacu-Chr2:32295873 1.20E-72 wgd
Clacu01g2487 Clacu-Chr1:35266813 Clacu03g0731 Clacu-Chr3:8139602 1.10E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47133 PF01486 K-box 5.00E-28 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2487 K09264 - csv:101221430 450.669