Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2489 ATGGAGAAATCAAGTTTCTTTCTCCTTCTGCTGCTCCTCCTTCTCCTCCCTTTCATTCAACAAGCCTCTTCTTCCCACACTCACAAAAAGGCTTACATTGTTTACTTTGGAGAACACCATGGAGATAAGAGTTGGGAAGAGATAGAAGCAATTCACCATTCATATTTGATGTCTGTTAAAGAGAGTGAAGAAGATGCAAAATCCTCTCTTCTGTACAATTACAAACACTCCATCAATGCCTTTGCTGCAATTCTTACTCCTCAACAAGCCTCCAAACTTTTAGAATTGGATGAAGTGGTGTCTGTGATAGAGAGTAAAAAGTATATGATGCACACAACAAGGTCATGGGAGTTTTCAGGGGTTGAAGAAGACAAACCCACCATTAATGACTTGGTTTCTAGAGCTAACTATGGAAAGGATGTTGTGATTGGAATGCTTGACAGTGGTGTGTGGCCAAAGTCCAAAAGCTTTAGTGACAAAGGGATGGGACCCATTCCAAAATCATGGAAGGGAATCTGCCAAACAGGACCTGCCTTTCAATCTGCTCATTGTAATAGGAAGATAATTGGAGCTCGATATTACCTAAAGGGATACGAGCATCACTTTGGCCGTTTAAATGAAACGGCGGACTACCGATCACCCTGCGACAAGGACGGCCACGGATCTCACACAGCCTCCATCGCCGGCGGCCGGAGGGTATACAATGTGTCGGGCTTTGGCGGCGTCGCTTGGGGCACGGCCTCTGGCGGCGCCCCATGGGCCCGGCTTGCAATTTACAAAGTTTGTTGGGCCATTCCCAACCAAATGAAAGCTCTGGGAAACGTTTGTTTCGACACTGACATGTTGGCTGCCATGGACGACGCCATTGCCGACGGCGTCGATGTTCTCAGCTTGTCCATCGGAAAATCGGAACCGTACAATTACACGGATGACGGAATCGCCATCGGAGCTCTGCACGCCGTTAAAAAAGACATCGTTGTGTCTTGTAGCGCTGGGAATTATGGGCCTACGCCGTCGGCGTTGTCTAATGTTGCTCCGTGGATCATAACCGTTGGAGCTAGCACTGTGGATCGGGAATTTTATTCTCCGGTCATTCTCGGTAATGGATTGAAGATTAAGGGATTGTCGGTGGCTCCTTCGAAGTTGAAGAGGAAGAAGATGTATCCATTGGTGTATGCTGGAGATATAATGAAGCCTCATGTACCTCGTAACCAATCTGGGCTATGTGTGGCAGGCTCGCTTTCACACGAGAAAGCCAAAGGAAAGATAGTGTTGTGCTTTAGAGGAGAAGGAATCAGCCGATACGCCGGCAGCCTAGAAGTTAAAAGGTCAGGCGGCGCCGGAATGATACTTGGAAACGTGCCGGCGGTAGGACGGAGGCTGCACGCCGATCCCCATTTCGTTCCGGCCACCGCCGTCTCTTACGAAGATGCAAATATGATCCTTAAATATATAAAATCTCGCGCAAATCCAACTGCAACTATTGTTCCACCTGTCACTATCTACGGCTCCAGGCCGGCGCCGGCCATGGCCAACTTCTCAAGTAGAGGTCCAAACCCCGTTGACCCTCATTTTCTTAAGCCAGACATAACAGCTCCGGGGGTGGACATACTAGCAGCATGGTCCGAAGAAGATTCCCCAACTAAACTTCCAAAATCCTTGGACTCTCGTATTGTCCAATACAATCTCTACTCCGGCACCTCCATGTCCTGTCCCCACGTCTCCGCCGCCGCTGCCCTCCTCCGCGCCATCCACCCTACATGGTCCCAAGCCGCCATCCGCTCCGCCCTCATGACCACCGCCACCACCAACAACAAATCCGGCCACCCCATCACCGACGACGCCACCCCCGACAACTCCCCCGCCAACCCTTTCTCCTTTGGGTCCGGCCACTTCCGCCCCTCCAAGGCGGCGGACCCCGGCCTCGTCTACGACACCAATTACACTGACTATCTCCACTACCTGTGCGGCCTCAAAATGAACTCCATTGACCCTTCCTTCACGTGCCCTCCACGTGCCCTCCCACCCCACGACCTCAATTACCCTTCCATTGCCGTCCCCCAACTCAGAGGCACCGTGAGGATCAAAAGGACCGTCACGAACGTGGGCGGCGGAGGTAAAAGTGTGTACTTCTTTTACAGCGAGGCGCCGCCGGGTGTGGCTGTGAGTGCTTCTCCTAATATACTGTATTTCAATAGAGTTGGGGAGAGGAAAAGATTTACAATTTCAGTGAGTGGGAAAGTGAAAAATAGTAATAATAATAGTAGTAATAATGGGTACTCTTTTGGTTGGTTTGCTTGGAGTGATGGGACTCACTATGTTAGAAGCCCAATTGCAGTTTCTTCTACTTAA 2352 50.21 MEKSSFFLLLLLLLLLPFIQQASSSHTHKKAYIVYFGEHHGDKSWEEIEAIHHSYLMSVKESEEDAKSSLLYNYKHSINAFAAILTPQQASKLLELDEVVSVIESKKYMMHTTRSWEFSGVEEDKPTINDLVSRANYGKDVVIGMLDSGVWPKSKSFSDKGMGPIPKSWKGICQTGPAFQSAHCNRKIIGARYYLKGYEHHFGRLNETADYRSPCDKDGHGSHTASIAGGRRVYNVSGFGGVAWGTASGGAPWARLAIYKVCWAIPNQMKALGNVCFDTDMLAAMDDAIADGVDVLSLSIGKSEPYNYTDDGIAIGALHAVKKDIVVSCSAGNYGPTPSALSNVAPWIITVGASTVDREFYSPVILGNGLKIKGLSVAPSKLKRKKMYPLVYAGDIMKPHVPRNQSGLCVAGSLSHEKAKGKIVLCFRGEGISRYAGSLEVKRSGGAGMILGNVPAVGRRLHADPHFVPATAVSYEDANMILKYIKSRANPTATIVPPVTIYGSRPAPAMANFSSRGPNPVDPHFLKPDITAPGVDILAAWSEEDSPTKLPKSLDSRIVQYNLYSGTSMSCPHVSAAAALLRAIHPTWSQAAIRSALMTTATTNNKSGHPITDDATPDNSPANPFSFGSGHFRPSKAADPGLVYDTNYTDYLHYLCGLKMNSIDPSFTCPPRALPPHDLNYPSIAVPQLRGTVRIKRTVTNVGGGGKSVYFFYSEAPPGVAVSASPNILYFNRVGERKRFTISVSGKVKNSNNNSSNNGYSFGWFAWSDGTHYVRSPIAVSST 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35283850 35291927 + ClG42_01g0248900.10 Clacu01g2489 241873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2489 783 ProSiteProfiles Serine proteases, subtilase domain profile. 115 638 - -
Clacu01g2489 783 FunFam Subtilisin-like protease SBT1.5 140 383 - -
Clacu01g2489 783 Pfam PA domain 388 480 IPR003137 -
Clacu01g2489 783 Pfam Peptidase inhibitor I9 32 111 IPR010259 -
Clacu01g2489 783 MobiDBLite consensus disorder prediction 603 630 - -
Clacu01g2489 783 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 111 IPR037045 -
Clacu01g2489 783 PRINTS Subtilisin serine protease family (S8) signature 216 229 IPR015500 -
Clacu01g2489 783 PRINTS Subtilisin serine protease family (S8) signature 138 157 IPR015500 -
Clacu01g2489 783 PRINTS Subtilisin serine protease family (S8) signature 565 581 IPR015500 -
Clacu01g2489 783 Gene3D - 357 502 - -
Clacu01g2489 783 Pfam Subtilase family 138 612 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Clacu01g2489 783 Pfam Fibronectin type-III domain 678 780 IPR041469 -
Clacu01g2489 783 Gene3D - 655 783 - -
Clacu01g2489 783 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 32 778 IPR045051 -
Clacu01g2489 783 SUPERFAMILY Subtilisin-like 111 642 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu01g2489 783 MobiDBLite consensus disorder prediction 603 626 - -
Clacu01g2489 783 ProSitePatterns Serine proteases, subtilase family, serine active site. 566 576 IPR023828 -
Clacu01g2489 783 Gene3D Peptidase S8/S53 domain 140 651 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu01g2489 783 CDD Peptidases_S8_3 108 602 IPR034197 -
Clacu01g2489 783 CDD PA_subtilisin_like 364 495 - -
Clacu01g2489 783 FunFam subtilisin-like protease SBT1.5 357 502 - -
Clacu01g2489 783 FunFam Subtilisin-like protease SBT5.3 20 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2489 Clacu-Chr1:35283850 Clacu10g0390 Clacu-Chr10:4921865 8.70E-173 dispersed
Clacu01g2489 Clacu-Chr1:35283850 Clacu09g0110 Clacu-Chr9:1017185 4.00E-162 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2489 - - - 0.0