Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2509 ATGTTCACGCTGCAGTTTGTGCCAAATGAAGCGACACTGGATGGTTTATATATCTCAATAATGGGTAAAGTTGACCTCTCGATCTCCTCTGGTACCTATTGGTACGTCAGGATCCAATTGGTCATGAACAATCGAATGGATGATCCTGAACTAGAAGCAATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGAAGCCAAAGTAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAGGAGTGAAGCAGAGGAACGCAGACAAATGATGCTTAGTCAGATTCTGTCGATGCAAGCGAGAGAAAGACTTTCTCGAATTGCATTGGTTAAACCTGAGAAGGCAAGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTTGAAAAGGTCTCTGAAGAGAGGCTTATAACATTGCTAGAACAGATCAACAATCAGACCACAAAACAGACGAAAGTCACTGTGAGTATTCATTGCTTACTTCATCGGTACCTGCTGAAATATGTTTCTGGGTCCCAACAAAAAGCTTCTCTCTTCCTGATTAACTCCCATTTGAGCTCTCACTTTCTCCATTTGACTTCGAATTCATCCCTAAATATCATTGCCCTGCCTCCGTTTCATTCTGACGCCTTCTGTTTCTGCAAAACTATTGGACTCAAGGCTGCTGGTTGCATCTTGTCCTCAGAGGTCAACCATCGCTATATCTCAATGGAGAAAGAGCCTCTTCTTCCATATCTTAGCCCAAGAGGGAAACCGCCTCCTCCACTTCCTCAATTATGTCCACTCCCTGAAAACGATGAAATTACTCTGCCTATGACCCCCACGGAGCTCAAAGACCGCTTGATCTTTGGTCCTTCGTCGTCCCCACAAGACGCTTCTCCTATATTCGATGCTTTAACGCTAACTCTTTCCTCTTCCAGACCCTCTGCTTCATCTTCTCTTCAGGACCCGTCTACGCCTTTGGACCCAAAATCACAATCGCAGTCTCAACAAGCGTGGCTCGTGGATTCCAATTACACATGGCCCAAGAGCAACCTCCACCGCTCCAAAACCGCGCCTGCCATGGCGGTCATCAACGATGTCAATCATTCGCAGGAGCCCAAGCCACAATTTGGTAAACAATCTATCATCCGCCAAGCTGTTGTTCTTCTAATTATATACTTATCATTGGGCGTGGTTATCTATTGGATTAATCGTGATAAGTTTACGGCTCACGAGACTCATCCTGTGGTCGATGCATTGTACTTTTGCATTGTAACGATGTGTACTATTGGGTATGGAGATATTACCCCCAATAGTGCGGCGACGAAGCTGTTCTCAGTGTTGTTTGTGTTGGTGGGATTTGGGTTTATTGATATATTGCTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTAAGGAATGTAAAGAGGGGGGTGCAGCGTCAATCTGGGAAATCTTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCATTGGCCCTTGGTGTTGTGATACTTTGTATAGGAGTTGGCATGGGTGTTATGCATTTTGTTGAGAATCTGGGGTGGTTGGATTCATTTTATCTTTCAGTTATGTCTGTCACGACAGTTGGATATGGTGATCAGGCATTCAAGTCAATGACTGGTCGTATTTTTGCTTCTATCTGGTTGCTTGTATCAACCCTTGCTGTAGCTCGGGCGTTTCTTTATTTAGCAGAGGCAAGAGTAGATAAGCGGCACAGGATGATGGCAAAATGGATACTTGGTCAGGATATGACTGTTTCTGAGTTTCTTGCTGCTGATATTGACAACAATGGTTTTGTGAGTAGGTCAGAATATGTGATATACAAGCTGAAGGAGATGGGTAAGGTATCAGAGAAAGATGTCATGCAGATATCTAATAACTTTGATAGGCTAGACACTGGCAAATGTGGGAAGATTACACTGGCTGATCTCTTGGAAAGTCATCACTGA 2007 44.2 MFTLQFVPNEATLDGLYISIMGKVDLSISSGTYWYVRIQLVMNNRMDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTVSIHCLLHRYLLKYVSGSQQKASLFLINSHLSSHFLHLTSNSSLNIIALPPFHSDAFCFCKTIGLKAAGCILSSEVNHRYISMEKEPLLPYLSPRGKPPPPLPQLCPLPENDEITLPMTPTELKDRLIFGPSSSPQDASPIFDALTLTLSSSRPSASSSLQDPSTPLDPKSQSQSQQAWLVDSNYTWPKSNLHRSKTAPAMAVINDVNHSQEPKPQFGKQSIIRQAVVLLIIYLSLGVVIYWINRDKFTAHETHPVVDALYFCIVTMCTIGYGDITPNSAATKLFSVLFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVQRQSGKSYIIDVKKGRMRIRMKVALALGVVILCIGVGMGVMHFVENLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVSRSEYVIYKLKEMGKVSEKDVMQISNNFDRLDTGKCGKITLADLLESHH 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35437240 35451418 + ClG42_01g0250900.10 Clacu01g2509 241893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2509 668 MobiDBLite consensus disorder prediction 314 336 - -
Clacu01g2509 668 Gene3D - 380 480 - -
Clacu01g2509 668 Gene3D - 513 576 - -
Clacu01g2509 668 Gene3D - 47 155 IPR036883 GO:0003677(InterPro)
Clacu01g2509 668 FunFam Two-pore potassium channel 5 372 482 - -
Clacu01g2509 668 SUPERFAMILY EF-hand 606 665 IPR011992 -
Clacu01g2509 668 ProSitePatterns EF-hand calcium-binding domain. 612 624 IPR018247 -
Clacu01g2509 668 PRINTS Two pore domain K+ channel signature 546 555 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Clacu01g2509 668 PRINTS Two pore domain K+ channel signature 426 454 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Clacu01g2509 668 PANTHER PROGRAMMED CELL DEATH PROTEIN 5 46 163 IPR002836 GO:0003677(InterPro)|GO:0005634(PANTHER)|GO:0005829(PANTHER)
Clacu01g2509 668 SUPERFAMILY Double-stranded DNA-binding domain 54 161 IPR036883 GO:0003677(InterPro)
Clacu01g2509 668 FunFam Programmed cell death, putative 47 155 - -
Clacu01g2509 668 Gene3D - 577 668 - -
Clacu01g2509 668 FunFam Two-pore potassium channel 3 491 605 - -
Clacu01g2509 668 Pfam Ion channel 515 584 IPR013099 -
Clacu01g2509 668 Pfam Ion channel 390 469 IPR013099 -
Clacu01g2509 668 SUPERFAMILY Voltage-gated potassium channels 498 604 - -
Clacu01g2509 668 Pfam Double-stranded DNA-binding domain 54 162 IPR002836 GO:0003677(InterPro)
Clacu01g2509 668 SUPERFAMILY Voltage-gated potassium channels 383 469 - -
Clacu01g2509 668 MobiDBLite consensus disorder prediction 65 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2509 Clacu-Chr1:35437240 Clacu09g2146 Clacu-Chr9:36219366 3.60E-50 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2509 K05389 - csv:101220017 765.377