Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g2509 | ATGTTCACGCTGCAGTTTGTGCCAAATGAAGCGACACTGGATGGTTTATATATCTCAATAATGGGTAAAGTTGACCTCTCGATCTCCTCTGGTACCTATTGGTACGTCAGGATCCAATTGGTCATGAACAATCGAATGGATGATCCTGAACTAGAAGCAATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGAAGCCAAAGTAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAGGAGTGAAGCAGAGGAACGCAGACAAATGATGCTTAGTCAGATTCTGTCGATGCAAGCGAGAGAAAGACTTTCTCGAATTGCATTGGTTAAACCTGAGAAGGCAAGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTTGAAAAGGTCTCTGAAGAGAGGCTTATAACATTGCTAGAACAGATCAACAATCAGACCACAAAACAGACGAAAGTCACTGTGAGTATTCATTGCTTACTTCATCGGTACCTGCTGAAATATGTTTCTGGGTCCCAACAAAAAGCTTCTCTCTTCCTGATTAACTCCCATTTGAGCTCTCACTTTCTCCATTTGACTTCGAATTCATCCCTAAATATCATTGCCCTGCCTCCGTTTCATTCTGACGCCTTCTGTTTCTGCAAAACTATTGGACTCAAGGCTGCTGGTTGCATCTTGTCCTCAGAGGTCAACCATCGCTATATCTCAATGGAGAAAGAGCCTCTTCTTCCATATCTTAGCCCAAGAGGGAAACCGCCTCCTCCACTTCCTCAATTATGTCCACTCCCTGAAAACGATGAAATTACTCTGCCTATGACCCCCACGGAGCTCAAAGACCGCTTGATCTTTGGTCCTTCGTCGTCCCCACAAGACGCTTCTCCTATATTCGATGCTTTAACGCTAACTCTTTCCTCTTCCAGACCCTCTGCTTCATCTTCTCTTCAGGACCCGTCTACGCCTTTGGACCCAAAATCACAATCGCAGTCTCAACAAGCGTGGCTCGTGGATTCCAATTACACATGGCCCAAGAGCAACCTCCACCGCTCCAAAACCGCGCCTGCCATGGCGGTCATCAACGATGTCAATCATTCGCAGGAGCCCAAGCCACAATTTGGTAAACAATCTATCATCCGCCAAGCTGTTGTTCTTCTAATTATATACTTATCATTGGGCGTGGTTATCTATTGGATTAATCGTGATAAGTTTACGGCTCACGAGACTCATCCTGTGGTCGATGCATTGTACTTTTGCATTGTAACGATGTGTACTATTGGGTATGGAGATATTACCCCCAATAGTGCGGCGACGAAGCTGTTCTCAGTGTTGTTTGTGTTGGTGGGATTTGGGTTTATTGATATATTGCTCTCTGGAATGGTCAGTTATGTGCTTGATTTGCAGGAGAGTTATTTGTTAAGGAATGTAAAGAGGGGGGTGCAGCGTCAATCTGGGAAATCTTATATAATTGATGTGAAGAAGGGAAGAATGAGGATTAGAATGAAAGTGGCATTGGCCCTTGGTGTTGTGATACTTTGTATAGGAGTTGGCATGGGTGTTATGCATTTTGTTGAGAATCTGGGGTGGTTGGATTCATTTTATCTTTCAGTTATGTCTGTCACGACAGTTGGATATGGTGATCAGGCATTCAAGTCAATGACTGGTCGTATTTTTGCTTCTATCTGGTTGCTTGTATCAACCCTTGCTGTAGCTCGGGCGTTTCTTTATTTAGCAGAGGCAAGAGTAGATAAGCGGCACAGGATGATGGCAAAATGGATACTTGGTCAGGATATGACTGTTTCTGAGTTTCTTGCTGCTGATATTGACAACAATGGTTTTGTGAGTAGGTCAGAATATGTGATATACAAGCTGAAGGAGATGGGTAAGGTATCAGAGAAAGATGTCATGCAGATATCTAATAACTTTGATAGGCTAGACACTGGCAAATGTGGGAAGATTACACTGGCTGATCTCTTGGAAAGTCATCACTGA | 2007 | 44.2 | MFTLQFVPNEATLDGLYISIMGKVDLSISSGTYWYVRIQLVMNNRMDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEARSEAEERRQMMLSQILSMQARERLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTVSIHCLLHRYLLKYVSGSQQKASLFLINSHLSSHFLHLTSNSSLNIIALPPFHSDAFCFCKTIGLKAAGCILSSEVNHRYISMEKEPLLPYLSPRGKPPPPLPQLCPLPENDEITLPMTPTELKDRLIFGPSSSPQDASPIFDALTLTLSSSRPSASSSLQDPSTPLDPKSQSQSQQAWLVDSNYTWPKSNLHRSKTAPAMAVINDVNHSQEPKPQFGKQSIIRQAVVLLIIYLSLGVVIYWINRDKFTAHETHPVVDALYFCIVTMCTIGYGDITPNSAATKLFSVLFVLVGFGFIDILLSGMVSYVLDLQESYLLRNVKRGVQRQSGKSYIIDVKKGRMRIRMKVALALGVVILCIGVGMGVMHFVENLGWLDSFYLSVMSVTTVGYGDQAFKSMTGRIFASIWLLVSTLAVARAFLYLAEARVDKRHRMMAKWILGQDMTVSEFLAADIDNNGFVSRSEYVIYKLKEMGKVSEKDVMQISNNFDRLDTGKCGKITLADLLESHH | 668 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 35437240 | 35451418 | + | ClG42_01g0250900.10 | Clacu01g2509 | 241893 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g2509 | 668 | MobiDBLite | consensus disorder prediction | 314 | 336 | - | - | |
Clacu01g2509 | 668 | Gene3D | - | 380 | 480 | - | - | |
Clacu01g2509 | 668 | Gene3D | - | 513 | 576 | - | - | |
Clacu01g2509 | 668 | Gene3D | - | 47 | 155 | IPR036883 | GO:0003677(InterPro) | |
Clacu01g2509 | 668 | FunFam | Two-pore potassium channel 5 | 372 | 482 | - | - | |
Clacu01g2509 | 668 | SUPERFAMILY | EF-hand | 606 | 665 | IPR011992 | - | |
Clacu01g2509 | 668 | ProSitePatterns | EF-hand calcium-binding domain. | 612 | 624 | IPR018247 | - | |
Clacu01g2509 | 668 | PRINTS | Two pore domain K+ channel signature | 546 | 555 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
Clacu01g2509 | 668 | PRINTS | Two pore domain K+ channel signature | 426 | 454 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
Clacu01g2509 | 668 | PANTHER | PROGRAMMED CELL DEATH PROTEIN 5 | 46 | 163 | IPR002836 | GO:0003677(InterPro)|GO:0005634(PANTHER)|GO:0005829(PANTHER) | |
Clacu01g2509 | 668 | SUPERFAMILY | Double-stranded DNA-binding domain | 54 | 161 | IPR036883 | GO:0003677(InterPro) | |
Clacu01g2509 | 668 | FunFam | Programmed cell death, putative | 47 | 155 | - | - | |
Clacu01g2509 | 668 | Gene3D | - | 577 | 668 | - | - | |
Clacu01g2509 | 668 | FunFam | Two-pore potassium channel 3 | 491 | 605 | - | - | |
Clacu01g2509 | 668 | Pfam | Ion channel | 515 | 584 | IPR013099 | - | |
Clacu01g2509 | 668 | Pfam | Ion channel | 390 | 469 | IPR013099 | - | |
Clacu01g2509 | 668 | SUPERFAMILY | Voltage-gated potassium channels | 498 | 604 | - | - | |
Clacu01g2509 | 668 | Pfam | Double-stranded DNA-binding domain | 54 | 162 | IPR002836 | GO:0003677(InterPro) | |
Clacu01g2509 | 668 | SUPERFAMILY | Voltage-gated potassium channels | 383 | 469 | - | - | |
Clacu01g2509 | 668 | MobiDBLite | consensus disorder prediction | 65 | 87 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g2509 | Clacu-Chr1:35437240 | Clacu09g2146 | Clacu-Chr9:36219366 | 3.60E-50 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g2509 | K05389 | - | csv:101220017 | 765.377 |