Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2510 ATGTCAGATGAAATGTTTAAAGATCTTTTTTATGGCGGGATGGATGAGTACGAGTCTCTAGTGAGAGCTTTTGGGGAATCATCGGATTATTCGAATAATAATAATGAAATTTCGGGGACTCCCATAAATTCTTGTGGATCTTTGTCGTCTTCGGATGCTGGAGCTGAGGAGGATGATTCTGTGAAAGACAAGGATAAGCAGATCGACAAAGAACATGTTGAAGATGGAGGAGAGAGTTCTAAGGCTGGATCAGGTAAATCAAAGAAGAAAGGAGAGAAGAAAGAGAGAGAAGCGAGAGTTGCTTTCATGACGAAGAGCGAGGTTGATCATCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCTGTTAAGAACAGTGCTTATCCTAGGAGCTATTACAGATGTACAACTCAAAAATGCGGAGTGAAAAAACGAGTAGAGAGATCCTTTGAAGATCCATCCATTGTAATTACAACCTACGAAGGTCAACACAACCACCCAGTCCCGACAACGCTAAGAGGAAACCTATCGGCGGCGAGCAGCGCGTTCTCGCCATCCATGCTAGCACCAATGCCAGTGGTCGGTGGTATTGGGTTTCTACCTACAGAGTTGTTGAGTAATTCTTCCAGCAACAATAACCAGGCCATCAATGGTGGCGCATCCGTTTATTCACATAACAACTTTGACTACACTTATAATGAGCGACAATCAGAATATGGGCTTCTACAGGATATTTTTCCAACTCCTTCATCGTTCTTCAACCGGCAATTGTGA 780 42.82 MSDEMFKDLFYGGMDEYESLVRAFGESSDYSNNNNEISGTPINSCGSLSSSDAGAEEDDSVKDKDKQIDKEHVEDGGESSKAGSGKSKKKGEKKEREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSAYPRSYYRCTTQKCGVKKRVERSFEDPSIVITTYEGQHNHPVPTTLRGNLSAASSAFSPSMLAPMPVVGGIGFLPTELLSNSSSNNNQAINGGASVYSHNNFDYTYNERQSEYGLLQDIFPTPSSFFNRQL 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35464939 35466494 + ClG42_01g0251000.10 Clacu01g2510 241894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2510 259 FunFam WRKY transcription factor 57 97 171 - -
Clacu01g2510 259 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 55 209 IPR044810 GO:0003700(InterPro)
Clacu01g2510 259 SMART WRKY_cls 111 170 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g2510 259 MobiDBLite consensus disorder prediction 27 98 - -
Clacu01g2510 259 ProSiteProfiles WRKY domain profile. 106 171 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g2510 259 SUPERFAMILY WRKY DNA-binding domain 103 171 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g2510 259 Gene3D WRKY domain 95 172 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g2510 259 MobiDBLite consensus disorder prediction 27 54 - -
Clacu01g2510 259 Pfam WRKY DNA -binding domain 112 169 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g2510 259 MobiDBLite consensus disorder prediction 55 98 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2510 Clacu-Chr1:35464939 Clacu09g2269 Clacu-Chr9:37434207 1.80E-42 dispersed
Clacu10g1144 Clacu-Chr10:24004320 Clacu01g2510 Clacu-Chr1:35464939 5.70E-14 dispersed
Clacu01g2510 Clacu-Chr1:35464939 Clacu02g1886 Clacu-Chr2:32374989 3.70E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47134 PF03106 WRKY 8.00E-26 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2510 - - - 0.0