Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2513 ATGGCTGCTTCTACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTCTCCCCCAACACCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAAACTGTCACCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCACCGTCCTACTTGACTGGAGAGTTCCCTGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGACCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTCTATCTCGCAATGGCGTGAAGTTTGGTGAAGCTGTGTGGTTCAAGGCTGGATCTCAAATCTTCAGCGAGGGAGGGCTCGACTACTTGGGGAATCCCAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTTGTGTTGATGGGCGCCGTCGAGGGCTACCGCATTGCCGGCGGCCCGCTCGGGGAGGTGACTGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTCTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAGGGTCCATTGGAGAATTTGGCTGACCACCTTGCTGATCCAGTCAACAACAATGCCTGGGCCTATGCCACAAACTTTGTTCCTGGAAAGTGA 798 55.76 MAASTMALSSPSLAGKAVKLSPNTPEIQGNGRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35489876 35490673 - ClG42_01g0251300.10 Clacu01g2513 241897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2513 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Clacu01g2513 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Clacu01g2513 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Clacu01g2513 265 Pfam Chlorophyll A-B binding protein 65 232 IPR022796 -
Clacu01g2513 265 MobiDBLite consensus disorder prediction 1 30 - -
Clacu01g2513 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2513 Clacu-Chr1:35489876 Clacu08g0197 Clacu-Chr8:3969328 4.30E-55 dispersed
Clacu01g2513 Clacu-Chr1:35489876 Clacu01g2514 Clacu-Chr1:35492442 7.50E-153 tandem
Clacu02g0282 Clacu-Chr2:2566692 Clacu01g2513 Clacu-Chr1:35489876 9.90E-121 transposed
Clacu03g0698 Clacu-Chr3:7760660 Clacu01g2513 Clacu-Chr1:35489876 9.80E-75 transposed
Clacu10g0629 Clacu-Chr10:8539886 Clacu01g2513 Clacu-Chr1:35489876 1.00E-96 transposed
Clacu10g1178 Clacu-Chr10:24465764 Clacu01g2513 Clacu-Chr1:35489876 4.90E-136 transposed
Clacu01g2513 Clacu-Chr1:35489876 Clacu02g1889 Clacu-Chr2:32393600 2.60E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2513 K08912 - csv:101221671 524.628