Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2514 ATGATTTCCCTGGATAAGGACCCTTCTCCCAAATCCAAGTATATTATGCTCATCATTCCTCTTCGTCAAATTCATCCACCAGCCTCTCCACTTCATTTCATACCCATTTCAAATTCTTTCTGGATCATTCCAATGGCTGCCTCTACAATGGCTCTCTCCTCCCCATCTCTGGCCGGCAAGGCCGTGAAGCTCTCCCCCAACGCCCCTGAAATTCAGGGCAATGGAAGAGTCAGCATGAGGAAGACGGCCAGCAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGCCCCGACCGTGTCAAGTACTTGGGCCCATTCTCCGGCGAGCCACCGTCCTACTTGACCGGAGAGTTCCCCGGTGACTACGGCTGGGACACTGCTGGACTTTCAGCCGATCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTTGGAGCTTTGGGCTGTGTCTTCCCTGAGCTTCTATCTCGCAATGGCGTGAAGTTTGGTGAAGCTGTGTGGTTCAAGGCTGGATCTCAAATCTTCAGCGAGGGAGGGCTCGACTACTTGGGGAATCCCAGCTTGATCCACGCACAGAGCATTTTGGCCATCTGGGCCACTCAGGTTGTGTTGATGGGCGCCGTCGAGGGCTACCGCATTGCCGGCGGCCCGCTCGGGGAGGTGACTGACCCCATCTACCCAGGTGGAAGCTTCGACCCATTGGGTCTGGCTGATGACCCAGAGGCCTTCGCTGAATTGAAGGTTAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTTCAAGCCATTGTTACTGGAAAAGGTCCATTGGAGAATTTGGCTGACCACCTTTCTGACCCAGTCAACAACAATGCTTGGGCTTATGCCACAAACTTTGTTCCCGGAAAGTGA 930 53.98 MISLDKDPSPKSKYIMLIIPLRQIHPPASPLHFIPISNSFWIIPMAASTMALSSPSLAGKAVKLSPNAPEIQGNGRVSMRKTASKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWAYATNFVPGK 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35492442 35493371 + ClG42_01g0251400.10 Clacu01g2514 241898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2514 309 MobiDBLite consensus disorder prediction 69 90 - -
Clacu01g2514 309 FunFam Chlorophyll a-b binding protein, chloroplastic 100 302 - -
Clacu01g2514 309 SUPERFAMILY Chlorophyll a-b binding protein 92 306 - -
Clacu01g2514 309 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 48 309 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Clacu01g2514 309 Gene3D Chlorophyll a/b binding protein domain 100 302 - -
Clacu01g2514 309 Pfam Chlorophyll A-B binding protein 109 276 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2514 Clacu-Chr1:35492442 Clacu02g1889 Clacu-Chr2:32393600 3.00E-145 dispersed
Clacu01g2513 Clacu-Chr1:35489876 Clacu01g2514 Clacu-Chr1:35492442 7.50E-153 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2514 K08912 - csv:101221671 527.709