Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2515 ATGGCTTCTAGCGTCAGTTTAGCCATTTTCATGATAGCTAGTTTTGTTCTAGTAAGGGTTCTGTCTACCCAACACCAATCCGCCATGGAAGTTGAATTGGAAGCCTTGAAGGCCTTCAAGAGTTGCATCCAGTTCGATCCATTGGGAGCACTTGCAGATTGGACGGACCTTAATCCCCACTGCAATTGGTCTGGCATTATATGTGACCCTGATTCCAAAAGGGTAATTTCGATTACTTTGATTGATCAGCAGCTTGAAGGCGAGATTTCTCCATTTATTGGGAACCTCTCAGCTCTCCAGGTTCTCGATTTAACTCAGAATTCGTTTACCGGGCAGATTCCAGGTGAATTGGGTTCGTGTTCCAACCTTTCTCAGCTCACTCTTTACAGAAACTTTCTTTCAGGTCACATTCCACTCCAGTTGGGAAACCTTGGGTTCCTGCAAGATGTTGATTTGGGAAATAACTTCTTAAAGGGAAGCATTCCTGATAGCATTTGCAATTGCACAAACTTGTTAGCATTTGGTGTAATATTTAATAATCTCACGGGAAGAATCCCATCAAACATAGGAAACTTAGTCGATCTTCAAATTCTGGTTGCATACGCCAACAAGCTTGAAGGTTCCATTCCCATCTCTATTGGCAAACTAGGTGCGCTGCAAACTCTAGATCTTAGCCAGAACAACTTGTCTGGGAATATACCAATGGAGATTGGGAATTTGTTGAATTTGGAGTATATTTCATTGTTTGAGAATGCTTTGGCTGGGAAAATTCCTGAGGAGATAGGTAAATGTGAGAAGCTTCTTTCTTTGGAACTATACAACAATAAGTTCAGTGGTCCAATTCCTTCACAATTAGGCTCTCTGATTCACTTACAAACCTTGCGTCTGTATACAAATAGATTAAATTCCACTATACCACAATCTCTCTTACAGTTGAAAGGTTTAACCCATTTGCTTCTCTCAGAGAACGAGTTAAGTGGAACTGTATCTTCTGATATTGGATCTTTGAGATCATTGCAGGTTTTGACTCTTCACTCGAATAGTTTTTTCGGGGTGATTCCTTTGTCTTTGACAAACTTGTCAAACCTCACACATTTGTCTCTGAGCTTCAATTTTTTCACTGGTGAGATTCCGTCCAATTTAGGTCTGCTTTATAATCTGAAGAGATTGACATTGAGCAGCAATTTCCTAGAAGGTTCAATTCCATCTAGTATTATCAATTGCACCCAGCTTTCTATAATTGATCTTTCATTCAATAGGCTGACAGGAAAAATACCTATGGGATACGGGAAGTTGCAGAATCTTACTTCCCTCTTGCTTGGATCAAATAGAATTTTTGGTGAAATCCCAGATGACTTATTTAATTGCTCATCCCTTGAGGTTGTAGACCTGGCTCTAAACAATTTCACTGGATTATTAAAATCCAGTATCGGCAAGCTTTCCAATATTCGAGTTTTCAGAGCCGCATCAAATTCATTTTCTGGGGAAATTCCAGGTGACATTGGCAACTTAAGCAGGCTCAACACTTTAGTACTTGCAGAAAATAAATTTTCAGGTCAAATTCCTGGGGAGTTGTCTAAGCTTTCTCTTCTTCAAGCTCTTTCTTTGCATGACAATGCATTGGAAGGAAGGATTCCTGAAAAAATATTTGATCTGAAACAACTGGTTCATCTTCATCTGCAGAACAACAAGTTCATAGGTCCAATTCCAGATGTCATCTCAAGACTAGAGTTTCTTTCGTATTTGGACCTTCATGGAAACATGCTTAATGGATCAGTTCCTAAAAGTATGAGGAATCTTCATCGACTTGTGATGTTAGATCTGTCCCGCAACCATCTATCTGGATCAATTCCTGGGGTTTTAATCTCAGGTATGAAAGATATGCAACTGTACATGAACTTGTCATACAATTTCCTGGTAGGAGCTATTCCAGCTGAGCTTGGGTTGTTGCGGTTGATACAATCCATTGACTTCTCAAACAACAATCTCACTGGGATTATTCCAGCCACGATCGGAGGTTGTAGAAATTTGTTCTTTCTTGATCTGTCAGGAAATCATCTTTCCGGTATGCTTCCAGGTAAAGCTTTTACCGGAATGAATATGCTCATGAGCTTGAACCTTTCAAGGAACAAAATAGCTGGTGAAATCCCAGAAGAGTTAGCAAATCCGGAGCACTTGTACTATTTGGACCTTTCTCAGAACCAGTTCAATGGCAGAATCCCTCAAAAACTTTCAGCTCTGAAGTATGTTAACCTTTCCTTTAATCAACTAGAAGGTCCTGTTCCAGACACCGGAATATTTCAAAAGATAAATGCTTCAAGCTTGATTGGAAATCCTGCTCTTTGTGGATCCAAGTCCTTCGCTCCTTGCGGAAAGAAGTATTTGCGACATCTATCAAAAAAGACCTTACTAATTCTCATAACCCTTGGATCTATTATTGTAGTCTTAGCTATAATTTTCTTAATTCTAGGCCTCAACCGATATCGTAAGCTTGAGAAATCTAAAAGTATTGAAAATCCTGAACCATCATTGGATTATGCATGTACCCTTAAGAGGTTTGATAAGAAGGATATGGAGATTGCAACAGAATACTTCAGCGATGAAAACATTCTAGGTTCCAGTACTTTAAGCACTGTCTACCGTGGTCAACTAGACAACGGACAGATTGTAGCTGTAAAAAGATTGAATTTGCAATATTTCTCTGCCGAATCAGATGATTTCTTCAGTAGAGAAATCAAGATTCTTTGTCAACTTAGACATAGGAATTTGGTGAAAGTACTCGGATATGCTTGGGAAAGCCAGAAGCTGAAGGCTATCGTGCTTGAATACATGGAAAATGGGAACTTGGATAGAATAATACATAACCCTGGAACAGATCAAATGAGTTGTTCATTGTCAAAGAGGGTTGATATTTGTGTTTCTGTTGCTAGTGGGATGCAATACCTGCATCATGGATATGATTTTCCCATCATTCACTGCGACTTGAAACCTTCAAACATCCTTCTTGATGGAGACTGGGTAGCCCATGTGAGTGATTTTGGAACTGCTAGAGTGTTGGGGGTGCAAAGCCAAGACACAAGCAGCATTTCCTCTTCAGCAGCTTTTGAAGGCAGTATCGGATATTTGGCTCCAGAGTTTGCATACATGGGGAAAGTGACAACAAAAGTAGATGTGTTCAGTTTTGGTGTAATACTGATGGAATTTCTGACAAAGAAGAGGCCAACTGCCACCATTGAAGCTCATGGACTCCCAATCAGCTTGCAGCAACTGGTAGAGAGAGCTCTAGCAAGTGGAAAGGAAGAAGTTAGTCAAGTTTTGGATCCTGTGCTGGTCTTGAATGATTCAAAGGAGCAAGGGAGGTTAGAAGAACTGCTCAAATTAGCACTAAGCTGTACCGCCCCAAATCCTGATAATAGACCTGACATGAATGAAATTCTGCCTATCCTTCTGAAGTTGCGCAGAGATGAATAG 3471 40.13 MASSVSLAIFMIASFVLVRVLSTQHQSAMEVELEALKAFKSCIQFDPLGALADWTDLNPHCNWSGIICDPDSKRVISITLIDQQLEGEISPFIGNLSALQVLDLTQNSFTGQIPGELGSCSNLSQLTLYRNFLSGHIPLQLGNLGFLQDVDLGNNFLKGSIPDSICNCTNLLAFGVIFNNLTGRIPSNIGNLVDLQILVAYANKLEGSIPISIGKLGALQTLDLSQNNLSGNIPMEIGNLLNLEYISLFENALAGKIPEEIGKCEKLLSLELYNNKFSGPIPSQLGSLIHLQTLRLYTNRLNSTIPQSLLQLKGLTHLLLSENELSGTVSSDIGSLRSLQVLTLHSNSFFGVIPLSLTNLSNLTHLSLSFNFFTGEIPSNLGLLYNLKRLTLSSNFLEGSIPSSIINCTQLSIIDLSFNRLTGKIPMGYGKLQNLTSLLLGSNRIFGEIPDDLFNCSSLEVVDLALNNFTGLLKSSIGKLSNIRVFRAASNSFSGEIPGDIGNLSRLNTLVLAENKFSGQIPGELSKLSLLQALSLHDNALEGRIPEKIFDLKQLVHLHLQNNKFIGPIPDVISRLEFLSYLDLHGNMLNGSVPKSMRNLHRLVMLDLSRNHLSGSIPGVLISGMKDMQLYMNLSYNFLVGAIPAELGLLRLIQSIDFSNNNLTGIIPATIGGCRNLFFLDLSGNHLSGMLPGKAFTGMNMLMSLNLSRNKIAGEIPEELANPEHLYYLDLSQNQFNGRIPQKLSALKYVNLSFNQLEGPVPDTGIFQKINASSLIGNPALCGSKSFAPCGKKYLRHLSKKTLLILITLGSIIVVLAIIFLILGLNRYRKLEKSKSIENPEPSLDYACTLKRFDKKDMEIATEYFSDENILGSSTLSTVYRGQLDNGQIVAVKRLNLQYFSAESDDFFSREIKILCQLRHRNLVKVLGYAWESQKLKAIVLEYMENGNLDRIIHNPGTDQMSCSLSKRVDICVSVASGMQYLHHGYDFPIIHCDLKPSNILLDGDWVAHVSDFGTARVLGVQSQDTSSISSSAAFEGSIGYLAPEFAYMGKVTTKVDVFSFGVILMEFLTKKRPTATIEAHGLPISLQQLVERALASGKEEVSQVLDPVLVLNDSKEQGRLEELLKLALSCTAPNPDNRPDMNEILPILLKLRRDE 1156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35493778 35497519 - ClG42_01g0251500.10 Clacu01g2515 241899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2515 1156 Gene3D Ribonuclease Inhibitor 522 628 IPR032675 -
Clacu01g2515 1156 Gene3D Ribonuclease Inhibitor 237 330 IPR032675 -
Clacu01g2515 1156 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 944 1156 - -
Clacu01g2515 1156 SMART LRR_typ_2 144 168 IPR003591 -
Clacu01g2515 1156 SMART LRR_typ_2 699 723 IPR003591 -
Clacu01g2515 1156 SMART LRR_typ_2 96 120 IPR003591 -
Clacu01g2515 1156 SMART LRR_typ_2 650 673 IPR003591 -
Clacu01g2515 1156 SMART LRR_typ_2 216 240 IPR003591 -
Clacu01g2515 1156 SMART LRR_typ_2 528 552 IPR003591 -
Clacu01g2515 1156 SMART LRR_typ_2 432 456 IPR003591 -
Clacu01g2515 1156 SMART LRR_typ_2 600 624 IPR003591 -
Clacu01g2515 1156 SMART LRR_typ_2 336 359 IPR003591 -
Clacu01g2515 1156 SMART LRR_typ_2 576 599 IPR003591 -
Clacu01g2515 1156 SMART LRR_typ_2 360 383 IPR003591 -
Clacu01g2515 1156 SMART LRR_typ_2 744 769 IPR003591 -
Clacu01g2515 1156 SMART LRR_typ_2 384 408 IPR003591 -
Clacu01g2515 1156 SMART LRR_typ_2 288 312 IPR003591 -
Clacu01g2515 1156 SMART LRR_typ_2 674 698 IPR003591 -
Clacu01g2515 1156 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 330 425 - -
Clacu01g2515 1156 SUPERFAMILY L domain-like 31 301 - -
Clacu01g2515 1156 Gene3D Ribonuclease Inhibitor 28 177 IPR032675 -
Clacu01g2515 1156 ProSiteProfiles Protein kinase domain profile. 865 1149 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2515 1156 Gene3D Transferase(Phosphotransferase) domain 1 944 1156 - -
Clacu01g2515 1156 SUPERFAMILY L domain-like 323 618 - -
Clacu01g2515 1156 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 184 283 - -
Clacu01g2515 1156 FunFam Leucine-rich repeat receptor-like protein kinase 701 792 - -
Clacu01g2515 1156 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 429 700 - -
Clacu01g2515 1156 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 12 371 - -
Clacu01g2515 1156 Pfam Protein kinase domain 866 1146 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2515 1156 SUPERFAMILY L domain-like 553 789 - -
Clacu01g2515 1156 Gene3D Ribonuclease Inhibitor 428 521 IPR032675 -
Clacu01g2515 1156 Gene3D Ribonuclease Inhibitor 331 427 IPR032675 -
Clacu01g2515 1156 Gene3D Ribonuclease Inhibitor 698 797 IPR032675 -
Clacu01g2515 1156 Pfam Leucine Rich Repeat 434 456 IPR001611 GO:0005515(InterPro)
Clacu01g2515 1156 Pfam Leucine Rich Repeat 362 382 IPR001611 GO:0005515(InterPro)
Clacu01g2515 1156 Pfam Leucine Rich Repeat 147 168 IPR001611 GO:0005515(InterPro)
Clacu01g2515 1156 Pfam Leucine Rich Repeat 99 120 IPR001611 GO:0005515(InterPro)
Clacu01g2515 1156 Pfam Leucine Rich Repeat 267 288 IPR001611 GO:0005515(InterPro)
Clacu01g2515 1156 Pfam Leucine Rich Repeat 386 408 IPR001611 GO:0005515(InterPro)
Clacu01g2515 1156 Pfam Leucine Rich Repeat 219 240 IPR001611 GO:0005515(InterPro)
Clacu01g2515 1156 CDD STKc_IRAK 871 1152 - -
Clacu01g2515 1156 Gene3D Phosphorylase Kinase; domain 1 828 943 - -
Clacu01g2515 1156 ProSitePatterns Serine/Threonine protein kinases active-site signature. 990 1002 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2515 1156 Pfam Leucine rich repeat N-terminal domain 32 69 IPR013210 -
Clacu01g2515 1156 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 826 943 - -
Clacu01g2515 1156 Pfam Leucine rich repeat 691 736 IPR001611 GO:0005515(InterPro)
Clacu01g2515 1156 Pfam Leucine rich repeat 554 613 IPR001611 GO:0005515(InterPro)
Clacu01g2515 1156 Pfam Leucine rich repeat 632 687 IPR001611 GO:0005515(InterPro)
Clacu01g2515 1156 SUPERFAMILY Protein kinase-like (PK-like) 842 1149 IPR011009 -
Clacu01g2515 1156 Gene3D Ribonuclease Inhibitor 178 236 IPR032675 -
Clacu01g2515 1156 Gene3D Ribonuclease Inhibitor 629 697 IPR032675 -
Clacu01g2515 1156 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 29 183 - -
Clacu01g2515 1156 SMART serkin_6 865 1149 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2067 Clacu-Chr1:32431922 Clacu01g2515 Clacu-Chr1:35493778 1.70E-09 dispersed
Clacu01g2515 Clacu-Chr1:35493778 Clacu03g0753 Clacu-Chr3:8396908 1.50E-56 dispersed
Clacu01g2515 Clacu-Chr1:35493778 Clacu03g0752 Clacu-Chr3:8386151 2.10E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73299 PF00069 Pkinase 8.10E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2515 K13420 - csv:101215973 1962.19