Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2519 ATGGCCCAACAAGACCAAGAAAACCAAAGCCAACACCGACGCCGAGCTATGACCAATGGCTTCGATTCTTCATCTGTAAACTGCAAAATTCAAGGTCGAAGAGAAATGGCGGGACTGAGAAGACTGGCGCAATTGAAACCCATAGCCGAAGAAGCATTGGCCGGAACAGTTTTCGTAGCGAAGTTCCTCTGTGGCCTTCATGTCGCCAACACTTACATCTGCACAGCCGCTCTCACCTATGGTCCCAGCATGCTCCCTACTCTGAACCTAACCGGTGATTTCATCTTGGCCGAACGACTCTCCACTCGCTTTGGCAGAGTCGGCGTCGGAGACATTGTCCTCGTGAGGTCTCCTGAAAACCCTCGTAAAGTAATGGCGAAGCGCTTGATGGGTATGGAGGGTGATTCTGTTACCTATGTTGTAGACCCAAAGAACAGTGATTGGAGCGAAACTGTTGTGGTTCCTAAGGGGCATGTTTGGATAGAGGGAGATAATATCTATGATTCAAATGATTCCAGAAATTTTGGGGCCGTTCCATATGGTCTTCTGCAAGGGAAAATATTTTGGAGGATATGGCCACCTGAAAGGTTTGGACCTTTGGAGAAGAGGAAATCAAACGAGGCCGTCTTGTGA 633 48.5 MAQQDQENQSQHRRRAMTNGFDSSSVNCKIQGRREMAGLRRLAQLKPIAEEALAGTVFVAKFLCGLHVANTYICTAALTYGPSMLPTLNLTGDFILAERLSTRFGRVGVGDIVLVRSPENPRKVMAKRLMGMEGDSVTYVVDPKNSDWSETVVVPKGHVWIEGDNIYDSNDSRNFGAVPYGLLQGKIFWRIWPPERFGPLEKRKSNEAVL 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35515094 35517159 + ClG42_01g0251900.10 Clacu01g2519 241903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2519 210 SUPERFAMILY LexA/Signal peptidase 71 200 IPR036286 -
Clacu01g2519 210 PRINTS Bacterial leader peptidase 1 (S26A) family signature 72 88 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Clacu01g2519 210 PRINTS Bacterial leader peptidase 1 (S26A) family signature 154 173 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Clacu01g2519 210 PRINTS Bacterial leader peptidase 1 (S26A) family signature 125 137 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Clacu01g2519 210 MobiDBLite consensus disorder prediction 1 22 - -
Clacu01g2519 210 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 43 202 IPR052064 GO:0006627(PANTHER)|GO:0042720(PANTHER)
Clacu01g2519 210 Gene3D Umud Fragment, subunit A 69 205 - -
Clacu01g2519 210 Pfam Signal peptidase, peptidase S26 66 140 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Clacu01g2519 210 Pfam Signal peptidase, peptidase S26 147 192 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Clacu01g2519 210 CDD S26_SPase_I 81 187 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Clacu01g2519 210 FunFam Inner membrane protease subunit 1 70 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2519 Clacu-Chr1:35515094 Clacu07g1034 Clacu-Chr7:24768108 5.40E-53 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2519 K09647 - csv:101209167 323.553