Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2525 ATGATGGCTGTGAATTTAAACGAAAGAGGTATCAGGGGAATAGTATTTACCCTTGAGACGCTTCGGAAGAATCGTGCCCATAAGCTGAAGGTGATTTTTGGGGCTTTTTCGCTTTTGCCATTGCCCTGCGGCCTGCGCCGTTGTGCTCTCCGTCGATCTTCAATTGGCAGCGCTCAGCCCGGACTCGGTCTTCCCGAGTCTGGACCGGTTTGGAGTGCCCTTCTGTTTATATCTTCTTTCGTCCGCTGGCCAATCAGAAGCTCTTCGGTCTCTCAATCAAGGTTCTCTCTCACTCGCTGTCTCTCTCCGCCGGTTCGTCGACGAAGAGCAAAGCAGAGGAAAGTTAGGGACAAGGTAATGGACGTTGGCGAAGAAATTAGGGCAGCTCATAAGCGAGATTTTCTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAAGCCATGATTAATCATAAGCGACATCGGCTCATAATCAACATTTCTGATCTTCATTCTTTCAGAGATCTTGGCCCCAGGGTGCTCAGGAATCCCAGTGAGTACATTCAGCCATTCTGTGACGCAGTCACAGAAACTGCTCGCAGTATCGACCCAAAATACCTTAAGGAAGGAGAGCAAGTTTTGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCCAGGGAACTTCTCTCTCAGTTTATTGGCTCCATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTCCATTTCTGCCCCACAACTGGAGGTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAGTATGGCCTGTGTAGATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAAAATTCAGCACCTGGTCAGCTTCCACGAACAGTGGATATCATAGTTGAGGACGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTATTCCAGGAAAAAGCAAGGGCAGCTTGAATGGAGTGTTCAGGACTGTTCTTGTTGCTAACAATGTTTCTCTACTAAACAAAGAGGCTAATGCACCGATATATAGTCCTGAGGACTTGAAGAACATTAAAAAGATAGCGGAAAGAGATGACACATTTGACCTTCTCGGAAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCCGTGATACTATTGATGCTTAGTGGAGTGGAGAAGAACTTGAAGAATGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCACAACTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCATCTGGTGTCGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAACGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAATGCTCGGTGCAGTGTGGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGATCGTTGACACCAACAAAGAATATAGGTCTTCCAGATTCTCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGATCGTCATATTTCGGAGCATGTGTTGCGTATGCACCGGTATCGTTCAGTACTTGATGGAGGTGAGGCTGGGGGCTCAGTGTACGGAAGAGAGGATGAAGCTGAAGCCGACACTTCTGTCTTTGTCAAGTATAATAGAATGCTTCATGGGAAAAAGACCGAACGTGGTCGGAAGCGTGATACCCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCCGATCTAACTGATGAGGCATCTGAGCAAATTGCAACAGCATATGCAGAACTTAGAAATTCAACTTCAAATGCGAAGACTGGAGGAACTCTTCCAATTACCGCGAGAACCCTGGAAACCATTATACGACTCTCAACTGCCCATGCGAAATTAAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTCGAGGCTGCCTTGAAAGTTCTTAATTTTGCTATATATCATAAAGAGTTGACTGACATGGAAGAGCGTGAGCAAGAAAGAGAGAAAGAATTGGAAAGAAAACGCAGAGCTGAACATCAAACAGTGGAAAATGATAGACCAGAACGTAGTACCAAAAGAAGAGAGGAGGGCTCAAGGACAGATACCATGGAAATTGATGATCCTCCTTCTGAACCTGTACTTGATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTGTTTGGTCAGCACATGCGTGCAAACCACCTGGATGTTATATCTATTGCAGACATTGAGAATGTCGTTAATGCTGCAGCAGATACTCATTACACTACCGCTGAAATAATGTTGCTCTTGCAGAGACTTCAAGATGATAACAGGATGGAAGGAAATGAAATTACGGAGGAAGTTGGAGAGAAACAAAGCGAAGAAAATTTAAATGTGAAGAGAAAGATTTTTGTGGCCGGTGCATCCGGAAGTACTGGAAAAAGGATTGTGGAGCAGTTGCTGGCAAGAGGCTTTGCAGTCAAGGCCGGGGTTCGAGACGTAAGCAAGGCTAAATCTACTCTTTCCCCGGGCAGTCCTGCTCTTCAAATTGTAAAAGCGGATGTGACTGAAGGCTCTGCAAAGTTGGCAGAAGCCATAGGTTCTGATTCTGAAGCAGTAATTTGTGCTACGGGCTTTCGCCGAGGATGGGATTTATTTGCGCCATGGAAGGTTGACAATTTAGGCACCGTAAACCTAGTTGAAGCATGCCGTGAGCTGGGCATAAACAGATTTATTCTGATCAGTTCCATTTTAGTCAATGGAGCTGCAATGGGACAGATTCTCAACCCAGCTTATATCTTTTTAAATGTCTTGGGACTCACCTTGATTGCAAAGCTTCAAGCAGAGCAGCACATCAGGAAATCCGGTATCAACTACACAATCATAAGGCCTGGAGGTTTGAAAAATGAGCCTCCCACTGGAAATTTAGTCATGACAGCAGAAGATACTCTTTATGAAGGAAGCATATCAAGAGATTTAGTTGCAGAAGTAGCTGTTGAGGCATTGGTTCTTTCCCAAGCCTCTTACAAGGTTGTCGAAATAGTTTCCCGTGCTGATGCGCCAAAGCGTTCATATGAGGATCTTTTTGGCTCCATAAAGCAGTGTTAG 3414 44.32 MMAVNLNERGIRGIVFTLETLRKNRAHKLKVIFGAFSLLPLPCGLRRCALRRSSIGSAQPGLGLPESGPVWSALLFISSFVRWPIRSSSVSQSRFSLTRCLSPPVRRRRAKQRKVRDKVMDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKAMINHKRHRLIINISDLHSFRDLGPRVLRNPSEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDIIVEDDLVDCCKPGDRVAIVGIYKAIPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSVYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEQIATAYAELRNSTSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTDMEEREQEREKELERKRRAEHQTVENDRPERSTKRREEGSRTDTMEIDDPPSEPVLDLSAERIEAFNSLFGQHMRANHLDVISIADIENVVNAAADTHYTTAEIMLLLQRLQDDNRMEGNEITEEVGEKQSEENLNVKRKIFVAGASGSTGKRIVEQLLARGFAVKAGVRDVSKAKSTLSPGSPALQIVKADVTEGSAKLAEAIGSDSEAVICATGFRRGWDLFAPWKVDNLGTVNLVEACRELGINRFILISSILVNGAAMGQILNPAYIFLNVLGLTLIAKLQAEQHIRKSGINYTIIRPGGLKNEPPTGNLVMTAEDTLYEGSISRDLVAEVAVEALVLSQASYKVVEIVSRADAPKRSYEDLFGSIKQC 1137
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 35548412 35559399 + ClG42_01g0252500.10 Clacu01g2525 241909
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2525 1137 Pfam MCM N-terminal domain 131 217 IPR027925 -
Clacu01g2525 1137 SMART mcm 223 759 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2525 1137 Gene3D - 122 218 - -
Clacu01g2525 1137 ProSiteProfiles MCM family domain profile. 408 614 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2525 1137 SMART AAA_5 450 603 IPR003593 GO:0016887(InterPro)
Clacu01g2525 1137 CDD MCM3 411 757 - -
Clacu01g2525 1137 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 746 761 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Clacu01g2525 1137 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 300 314 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Clacu01g2525 1137 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 326 338 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Clacu01g2525 1137 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 577 587 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Clacu01g2525 1137 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 610 620 IPR008046 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Clacu01g2525 1137 Gene3D - 254 308 - -
Clacu01g2525 1137 CDD SDR_a5 904 1119 - -
Clacu01g2525 1137 FunFam DNA helicase 124 223 - -
Clacu01g2525 1137 Coils Coil 760 786 - -
Clacu01g2525 1137 MobiDBLite consensus disorder prediction 766 817 - -
Clacu01g2525 1137 MobiDBLite consensus disorder prediction 766 812 - -
Clacu01g2525 1137 Pfam NAD(P)H-binding 909 1104 IPR016040 -
Clacu01g2525 1137 Gene3D - 228 358 IPR012340 -
Clacu01g2525 1137 SUPERFAMILY Nucleic acid-binding proteins 132 376 IPR012340 -
Clacu01g2525 1137 Gene3D - 887 1126 - -
Clacu01g2525 1137 Gene3D - 390 780 IPR027417 -
Clacu01g2525 1137 PRINTS Mini-chromosome maintenance (MCM) protein family signature 561 573 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2525 1137 PRINTS Mini-chromosome maintenance (MCM) protein family signature 537 550 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2525 1137 PRINTS Mini-chromosome maintenance (MCM) protein family signature 509 523 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2525 1137 PRINTS Mini-chromosome maintenance (MCM) protein family signature 588 596 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2525 1137 PRINTS Mini-chromosome maintenance (MCM) protein family signature 449 464 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2525 1137 FunFam DNA helicase 254 308 - -
Clacu01g2525 1137 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 122 851 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER)
Clacu01g2525 1137 Pfam MCM OB domain 228 359 IPR033762 -
Clacu01g2525 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 418 771 IPR027417 -
Clacu01g2525 1137 ProSitePatterns MCM family signature. 517 525 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Clacu01g2525 1137 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 903 1118 IPR036291 -
Clacu01g2525 1137 Pfam MCM P-loop domain 396 618 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2525 1137 Pfam MCM AAA-lid domain 672 755 IPR041562 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2525 Clacu-Chr1:35548412 Clacu09g0515 Clacu-Chr9:4416247 2.80E-95 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2525 K02541 - csv:101210889 1444.87