Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu01g2525 | ATGATGGCTGTGAATTTAAACGAAAGAGGTATCAGGGGAATAGTATTTACCCTTGAGACGCTTCGGAAGAATCGTGCCCATAAGCTGAAGGTGATTTTTGGGGCTTTTTCGCTTTTGCCATTGCCCTGCGGCCTGCGCCGTTGTGCTCTCCGTCGATCTTCAATTGGCAGCGCTCAGCCCGGACTCGGTCTTCCCGAGTCTGGACCGGTTTGGAGTGCCCTTCTGTTTATATCTTCTTTCGTCCGCTGGCCAATCAGAAGCTCTTCGGTCTCTCAATCAAGGTTCTCTCTCACTCGCTGTCTCTCTCCGCCGGTTCGTCGACGAAGAGCAAAGCAGAGGAAAGTTAGGGACAAGGTAATGGACGTTGGCGAAGAAATTAGGGCAGCTCATAAGCGAGATTTTCTGGAATTCCTTGAACAGGATGTTGGGAAAGGAATTTACATGGACGAGATCAAAGCCATGATTAATCATAAGCGACATCGGCTCATAATCAACATTTCTGATCTTCATTCTTTCAGAGATCTTGGCCCCAGGGTGCTCAGGAATCCCAGTGAGTACATTCAGCCATTCTGTGACGCAGTCACAGAAACTGCTCGCAGTATCGACCCAAAATACCTTAAGGAAGGAGAGCAAGTTTTGGTGGGCTTTGAGGGCCCCTTTGTTTCTCGCCGTGTCACTCCCAGGGAACTTCTCTCTCAGTTTATTGGCTCCATGGTCTGCGTTGAGGGCATTGTTACCAAATGTTCTCTTGTTAGACCAAAAGTTGTCAAAAGTGTCCATTTCTGCCCCACAACTGGAGGTTTTACCAGCCGTGAATACCGTGACATTACATCCAACATGGGCTTGCCCACAGGATCTGTGTATCCCACAAGGGATGACAATGGCAACTTGTTGGTTACTGAGTATGGCCTGTGTAGATATAAAGATCATCAGACCTTATCAATGCAAGAAATGCCTGAAAATTCAGCACCTGGTCAGCTTCCACGAACAGTGGATATCATAGTTGAGGACGACTTAGTTGACTGTTGCAAGCCAGGTGATCGTGTTGCTATTGTAGGAATATATAAAGCTATTCCAGGAAAAAGCAAGGGCAGCTTGAATGGAGTGTTCAGGACTGTTCTTGTTGCTAACAATGTTTCTCTACTAAACAAAGAGGCTAATGCACCGATATATAGTCCTGAGGACTTGAAGAACATTAAAAAGATAGCGGAAAGAGATGACACATTTGACCTTCTCGGAAATTCTCTTGCACCTTCCATATATGGACATTCATGGATAAAAAAAGCCGTGATACTATTGATGCTTAGTGGAGTGGAGAAGAACTTGAAGAATGGCACCCACTTAAGAGGTGATATCAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCACAACTTTTAAGGGCAATCATGAATATTGCACCCTTAGCAATATCCACAACAGGCCGTGGTTCATCTGGTGTCGGGTTAACTGCTGCTGTTACATCAGATCAGGAAACAGGAGAACGAAGGCTAGAAGCTGGTGCAATGGTTCTTGCTGATCGAGGTGTTGTCTGTATTGATGAGTTTGACAAGATGAATGATCAAGATAGGGTTGCAATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCCAAAGCTGGCATTCATGCTTCACTGAATGCTCGGTGCAGTGTGGTAGCAGCTGCAAATCCCATATATGGATCTTACGATCGATCGTTGACACCAACAAAGAATATAGGTCTTCCAGATTCTCTACTCTCTCGATTTGATCTACTGTTTATTGTATTGGATCAAATGGATCCCGATATTGATCGTCATATTTCGGAGCATGTGTTGCGTATGCACCGGTATCGTTCAGTACTTGATGGAGGTGAGGCTGGGGGCTCAGTGTACGGAAGAGAGGATGAAGCTGAAGCCGACACTTCTGTCTTTGTCAAGTATAATAGAATGCTTCATGGGAAAAAGACCGAACGTGGTCGGAAGCGTGATACCCTCACCATCAAGTTTCTTAAGAAGTACATTCATTATGCTAAGCATAGGATACAACCCGATCTAACTGATGAGGCATCTGAGCAAATTGCAACAGCATATGCAGAACTTAGAAATTCAACTTCAAATGCGAAGACTGGAGGAACTCTTCCAATTACCGCGAGAACCCTGGAAACCATTATACGACTCTCAACTGCCCATGCGAAATTAAAGTTGAGTAGAAAGGTTTCCAAATCTGATGTCGAGGCTGCCTTGAAAGTTCTTAATTTTGCTATATATCATAAAGAGTTGACTGACATGGAAGAGCGTGAGCAAGAAAGAGAGAAAGAATTGGAAAGAAAACGCAGAGCTGAACATCAAACAGTGGAAAATGATAGACCAGAACGTAGTACCAAAAGAAGAGAGGAGGGCTCAAGGACAGATACCATGGAAATTGATGATCCTCCTTCTGAACCTGTACTTGATCTGTCTGCAGAAAGAATAGAAGCATTCAATTCTTTGTTTGGTCAGCACATGCGTGCAAACCACCTGGATGTTATATCTATTGCAGACATTGAGAATGTCGTTAATGCTGCAGCAGATACTCATTACACTACCGCTGAAATAATGTTGCTCTTGCAGAGACTTCAAGATGATAACAGGATGGAAGGAAATGAAATTACGGAGGAAGTTGGAGAGAAACAAAGCGAAGAAAATTTAAATGTGAAGAGAAAGATTTTTGTGGCCGGTGCATCCGGAAGTACTGGAAAAAGGATTGTGGAGCAGTTGCTGGCAAGAGGCTTTGCAGTCAAGGCCGGGGTTCGAGACGTAAGCAAGGCTAAATCTACTCTTTCCCCGGGCAGTCCTGCTCTTCAAATTGTAAAAGCGGATGTGACTGAAGGCTCTGCAAAGTTGGCAGAAGCCATAGGTTCTGATTCTGAAGCAGTAATTTGTGCTACGGGCTTTCGCCGAGGATGGGATTTATTTGCGCCATGGAAGGTTGACAATTTAGGCACCGTAAACCTAGTTGAAGCATGCCGTGAGCTGGGCATAAACAGATTTATTCTGATCAGTTCCATTTTAGTCAATGGAGCTGCAATGGGACAGATTCTCAACCCAGCTTATATCTTTTTAAATGTCTTGGGACTCACCTTGATTGCAAAGCTTCAAGCAGAGCAGCACATCAGGAAATCCGGTATCAACTACACAATCATAAGGCCTGGAGGTTTGAAAAATGAGCCTCCCACTGGAAATTTAGTCATGACAGCAGAAGATACTCTTTATGAAGGAAGCATATCAAGAGATTTAGTTGCAGAAGTAGCTGTTGAGGCATTGGTTCTTTCCCAAGCCTCTTACAAGGTTGTCGAAATAGTTTCCCGTGCTGATGCGCCAAAGCGTTCATATGAGGATCTTTTTGGCTCCATAAAGCAGTGTTAG | 3414 | 44.32 | MMAVNLNERGIRGIVFTLETLRKNRAHKLKVIFGAFSLLPLPCGLRRCALRRSSIGSAQPGLGLPESGPVWSALLFISSFVRWPIRSSSVSQSRFSLTRCLSPPVRRRRAKQRKVRDKVMDVGEEIRAAHKRDFLEFLEQDVGKGIYMDEIKAMINHKRHRLIINISDLHSFRDLGPRVLRNPSEYIQPFCDAVTETARSIDPKYLKEGEQVLVGFEGPFVSRRVTPRELLSQFIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGGFTSREYRDITSNMGLPTGSVYPTRDDNGNLLVTEYGLCRYKDHQTLSMQEMPENSAPGQLPRTVDIIVEDDLVDCCKPGDRVAIVGIYKAIPGKSKGSLNGVFRTVLVANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIYGHSWIKKAVILLMLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGSYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLRMHRYRSVLDGGEAGGSVYGREDEAEADTSVFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASEQIATAYAELRNSTSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTDMEEREQEREKELERKRRAEHQTVENDRPERSTKRREEGSRTDTMEIDDPPSEPVLDLSAERIEAFNSLFGQHMRANHLDVISIADIENVVNAAADTHYTTAEIMLLLQRLQDDNRMEGNEITEEVGEKQSEENLNVKRKIFVAGASGSTGKRIVEQLLARGFAVKAGVRDVSKAKSTLSPGSPALQIVKADVTEGSAKLAEAIGSDSEAVICATGFRRGWDLFAPWKVDNLGTVNLVEACRELGINRFILISSILVNGAAMGQILNPAYIFLNVLGLTLIAKLQAEQHIRKSGINYTIIRPGGLKNEPPTGNLVMTAEDTLYEGSISRDLVAEVAVEALVLSQASYKVVEIVSRADAPKRSYEDLFGSIKQC | 1137 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 35548412 | 35559399 | + | ClG42_01g0252500.10 | Clacu01g2525 | 241909 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu01g2525 | 1137 | Pfam | MCM N-terminal domain | 131 | 217 | IPR027925 | - | |
| Clacu01g2525 | 1137 | SMART | mcm | 223 | 759 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2525 | 1137 | Gene3D | - | 122 | 218 | - | - | |
| Clacu01g2525 | 1137 | ProSiteProfiles | MCM family domain profile. | 408 | 614 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2525 | 1137 | SMART | AAA_5 | 450 | 603 | IPR003593 | GO:0016887(InterPro) | |
| Clacu01g2525 | 1137 | CDD | MCM3 | 411 | 757 | - | - | |
| Clacu01g2525 | 1137 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 746 | 761 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Clacu01g2525 | 1137 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 300 | 314 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Clacu01g2525 | 1137 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 326 | 338 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Clacu01g2525 | 1137 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 577 | 587 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Clacu01g2525 | 1137 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 610 | 620 | IPR008046 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Clacu01g2525 | 1137 | Gene3D | - | 254 | 308 | - | - | |
| Clacu01g2525 | 1137 | CDD | SDR_a5 | 904 | 1119 | - | - | |
| Clacu01g2525 | 1137 | FunFam | DNA helicase | 124 | 223 | - | - | |
| Clacu01g2525 | 1137 | Coils | Coil | 760 | 786 | - | - | |
| Clacu01g2525 | 1137 | MobiDBLite | consensus disorder prediction | 766 | 817 | - | - | |
| Clacu01g2525 | 1137 | MobiDBLite | consensus disorder prediction | 766 | 812 | - | - | |
| Clacu01g2525 | 1137 | Pfam | NAD(P)H-binding | 909 | 1104 | IPR016040 | - | |
| Clacu01g2525 | 1137 | Gene3D | - | 228 | 358 | IPR012340 | - | |
| Clacu01g2525 | 1137 | SUPERFAMILY | Nucleic acid-binding proteins | 132 | 376 | IPR012340 | - | |
| Clacu01g2525 | 1137 | Gene3D | - | 887 | 1126 | - | - | |
| Clacu01g2525 | 1137 | Gene3D | - | 390 | 780 | IPR027417 | - | |
| Clacu01g2525 | 1137 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 561 | 573 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2525 | 1137 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 537 | 550 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2525 | 1137 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 509 | 523 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2525 | 1137 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 588 | 596 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2525 | 1137 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 449 | 464 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2525 | 1137 | FunFam | DNA helicase | 254 | 308 | - | - | |
| Clacu01g2525 | 1137 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 122 | 851 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902975(PANTHER) | |
| Clacu01g2525 | 1137 | Pfam | MCM OB domain | 228 | 359 | IPR033762 | - | |
| Clacu01g2525 | 1137 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 418 | 771 | IPR027417 | - | |
| Clacu01g2525 | 1137 | ProSitePatterns | MCM family signature. | 517 | 525 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Clacu01g2525 | 1137 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 903 | 1118 | IPR036291 | - | |
| Clacu01g2525 | 1137 | Pfam | MCM P-loop domain | 396 | 618 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2525 | 1137 | Pfam | MCM AAA-lid domain | 672 | 755 | IPR041562 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g2525 | Clacu-Chr1:35548412 | Clacu09g0515 | Clacu-Chr9:4416247 | 2.80E-95 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu01g2525 | K02541 | - | csv:101210889 | 1444.87 |