Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2559 ATGATTGAGATTGATTCAGAGAAAGAGTTTTTTGTGTTTGTTCGTTGGTTTCGTCGTTCTCGTTTCGTTTGCCGATTGAAGGGAGAAGATGAGTATGGTAAAGTCTCAGATATGGCTTCCAGGTCCAGCAGTCATAGCAAATCGCGGGTGGGGAGATACGAGCTGGGACGAACCCTTGGAGAGGGCAGCTTCGCCAAGGTTAAGTTCGCTCGGAATTGCGAGACGGGAGAGAACGTAGCCATCAAAATCCTCGACAAAGAGGATATTCTCAAACACAAGATGATCGGGCAGATTAAACGTGAAATATCCACTATGAAACTCATTAGACATCCAAATGTCATTCGCATGTACGAGGTGATGGCTAGCAAGACCAAGATATATATTGTTTTGGAATTTGTAACCGGTGGAGAACTATTCGCCAAAATTGCGTGTAAGGGAAGATTGAAAGAAGATGAAGCAAGAAAGTATTTTCAGCAGTTAATAAATGCAGTGGATTATTGCCATAGTAGAGGTGTTTGTCATCGAGACCTAAAGCCAGAGAATTTATTATTGGATGCTAGTGGCGTTCTAAAAATTTCAGATTTTGGATTGAGTGCTCTACCTCAACAAGTTCGAGGTGATGGATTACTTCACACAACATGCGGAACGCCCAATTATGTTGCTCCAGAGGTTATCAACAATAAAGGGTACTATGGAGCAAAGGCTGACCTATGGTCATGTGGGGTTATCCTTTTTGTCCTCATGGCAGGCTACTTGCCGTTTGAAGACTCCAATCTCATGGCATTGTATAAAAAGATATTCAAGGCAGACTTCACATGTCCTCCATGGTTCTCCTCTAGTGCCAAGAAATTAATCAAGAGAATCCTGGATCCGAATCCATTAACTAGAATTACAATTGCTGAAGTCCTTGAGAATGATTGGTTTAAGAAAGGATACAAGCCACCCACTTTTGAAAATGACGAAATCAGTATTGATAACGTTGATGACATCTTTAATGAATCAGGGGCCACTGATAACCTTGTTGTTGAGAGGAGAGAAGATAGATCTGCATCACTTGCATCACCTGTCACCATGAATGCATTTGAGCTCATCTCGAAATCTCGGGGCCTCAACCTTGCCACTCTTTTTGAGAAGCAAATGGGGATAATTAAACGTGAAACGAGATTCACATCCAATTGTCCAGCAGATGAAATCATTTCGAAGATAAAAAACACTGCTGTTCCTTTGGGCTTTGATGTGAAGATTAATAACTTCAAGATGAAGCTCCAAGGGGAAAAAACTGGACGCAAAGGTCATTTATCAGTTGCAACAGAGATTTTTCAGGTTGCTCCTTCCTTGCATATGGTGGAGCTTCGCAAAGCTGGAGGCGACACTTTAGAATTTCAAAAGTTCTACAATAACCTCTCAACTGGACTGAAAGATATCGTATGGAGATACGGAGACGAGATGGAGCAGGAAAGTAATGGTGCGGATTGTTGA 1479 41.85 MIEIDSEKEFFVFVRWFRRSRFVCRLKGEDEYGKVSDMASRSSSHSKSRVGRYELGRTLGEGSFAKVKFARNCETGENVAIKILDKEDILKHKMIGQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFAKIACKGRLKEDEARKYFQQLINAVDYCHSRGVCHRDLKPENLLLDASGVLKISDFGLSALPQQVRGDGLLHTTCGTPNYVAPEVINNKGYYGAKADLWSCGVILFVLMAGYLPFEDSNLMALYKKIFKADFTCPPWFSSSAKKLIKRILDPNPLTRITIAEVLENDWFKKGYKPPTFENDEISIDNVDDIFNESGATDNLVVERREDRSASLASPVTMNAFELISKSRGLNLATLFEKQMGIIKRETRFTSNCPADEIISKIKNTAVPLGFDVKINNFKMKLQGEKTGRKGHLSVATEIFQVAPSLHMVELRKAGGDTLEFQKFYNNLSTGLKDIVWRYGDEMEQESNGADC 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35853039 35858538 + ClG42_01g0255900.10 Clacu01g2559 241943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2559 492 FunFam Non-specific serine/threonine protein kinase 353 478 - -
Clacu01g2559 492 CDD CIPK_C 359 474 - -
Clacu01g2559 492 Gene3D Kinase associated domain 1, KA1 353 478 - -
Clacu01g2559 492 FunFam Non-specific serine/threonine protein kinase 44 132 - -
Clacu01g2559 492 CDD STKc_SnRK3 52 307 - -
Clacu01g2559 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2559 492 Gene3D Phosphorylase Kinase; domain 1 41 132 - -
Clacu01g2559 492 FunFam Non-specific serine/threonine protein kinase 46 349 - -
Clacu01g2559 492 Pfam Protein kinase domain 53 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2559 492 SUPERFAMILY Protein kinase-like (PK-like) 50 317 IPR011009 -
Clacu01g2559 492 Gene3D Transferase(Phosphotransferase) domain 1 133 315 - -
Clacu01g2559 492 SMART serkin_6 53 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2559 492 ProSiteProfiles Protein kinase domain profile. 53 308 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2559 492 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524(InterPro)
Clacu01g2559 492 Pfam NAF domain 355 414 IPR004041 GO:0007165(InterPro)
Clacu01g2559 492 ProSiteProfiles NAF domain profile. 353 377 IPR018451 GO:0007165(InterPro)
Clacu01g2559 492 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 37 466 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2559 Clacu-Chr1:35853039 Clacu02g2460 Clacu-Chr2:37542285 2.70E-172 dispersed
Clacu01g2559 Clacu-Chr1:35853039 Clacu03g0658 Clacu-Chr3:7234287 7.50E-215 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73300 PF00069 Pkinase 2.00E-74 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2559 - - - 0.0