Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g2567 | ATGAAGTCGGCCATTGAAGAGTTGTCGAAACCGGCTTCGGCTGAGATTTTGGGCGGTGGGGGTTGGGTTGTGATATTCCCAGATGAGGTTCCACTGTTTGTTGTTTACTTTCTGAAGATTCAGATTGACTTGCTGGTCGATTTATGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCCCCGGAAGGGGAGGGGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCACAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTCGATGCCCATATACCGAGTTATCCAAGCTTGCCGCCCCAACTTATCTGTCAGCTTCACAATGTTACAATGCATGCAGATGTTGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCGCTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGTGCCCCCAGCAAACAACCAACCAATTACTTTTGTAAAACATTAACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCACTGGACTTTTCTCAGCAGCCACCGGCTCAGGAGTTAATTGCCAGGGATCTGCACGATAATGAATGGAAATTTAGGCATATCTTTCGTGGCCAGCCCAAACGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCAGTTATCTTTATTTGGAATGAAAAAAATCAATTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTAATGCCCTCGTCCGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGCCGGTTCACGATATTTTATAATCCAAGGGCTAGCCCGTCAGAGTTCATCATACCTCTAGCCAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCAGTTGGTATGCGCTTTAGAATGCTATTTGAAACGGAAGAATCAAGTGTTCGTCGCTACATGGGCACTATTACTGGTATCGGTGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCCGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTTACAACCTTCCCAATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTTCCTTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTGAATTCTCAACTAATGTGGCTTCGGGGAGATGGTCTAGATCGTGGAATTCAACCTCTGAACTTCCCCGGAATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCAATGGTGGGTCTGCAGCCAGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGCTAAGGTGCAGGCTGCTTCGCTTCTTCAATTCCAACAAACCCAAAATCTTCCCAACAGACCTACTTTCATGCCACCTCAGATGTTGCAGCCTCAGCCTCAACCTCAGCCTCCACAGACCTTTCTTCAAGGTGATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACCACCAGCAGCAGCAGCAGCAGCAACAACAACAGCAACAACCACAACAGCAAGTGTTTGATCACCAACAAATTCCAAGTCCCATATCTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAATCCCAATCCCTGCAAACTATTCCTCCATTATGTCGGCAGCAAAGTTTTTCTGATTCTAATGCCAACCATGTAACGAGTCCCATCATTTCACCCTTGCACAGCCTGTTAGGTTCATTTCCGCAAGATGAATCATCTCAGTTGCTTAATCTGCCTCGAACCAATCCCATGATACATTCATCTACTTGGCCGTCAAAGCGAGCTGCAGTGGATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTTCCCAAGGGGAAAACATGGGGACAACTCAGACTAATATCTCTCAGAATGCTATTTTGTTGCCGCCTTTTCCTGGAAGAGAGTGTTCATTAGATCAAGGGAATGCTGATCCGCAGAGTAATCTTCTCTTTGGTGTCAATATAGAGCCTTCATCTCTTTTAATGCAGAATGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCATCCAATTATGTGAATACTGCTGGTAACAACTTCTCTGCCAGTCCAACTGGAACAGGGACACCTTCCAATTGCATTGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTAAACCCACCAACCAGAACCTTTGTAAAGGTTTACAAGTCGGGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGCTACGCAGTGAGCTCGCTCACATGTTCGGCCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAATTTGTCAACAGTGTGTGGTGTATCAAAATCCTTTCACCCGAGGAAGTGCAGGAGATGGGCAAACGCGGCCTAGAGCTCTTGAACTCAGTCCCGATTCAGAGGCTCTCAAATGGCAGTTGTGATAACTACGCCAATAGACAGGAATCATCCAGAAATTTGAGTACCGGGATAACTTCTGTCGGGTCTCTCGAGTACTGA | 2865 | 47.12 | MKSAIEELSKPASAEILGGGGWVVIFPDEVPLFVVYFLKIQIDLLVDLWLSTAGFSPQAPEGEGRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQPLNFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKVQAASLLQFQQTQNLPNRPTFMPPQMLQPQPQPQPPQTFLQGDENQHLSHSQAQSQPTVLQQEIKHQTFNNHQQQQQQQQQQQQPQQQVFDHQQIPSPISTMSQFSSASQSQSQSLQTIPPLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMIHSSTWPSKRAAVDPLLSSGNSQFVLSQGENMGTTQTNISQNAILLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTAGNNFSASPTGTGTPSNCIEDSGFLQSPENTGQVNPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAHMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPEEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY | 954 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 35910482 | 35915802 | - | ClG42_01g0256700.10 | Clacu01g2567 | 241951 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g2567 | 954 | Pfam | AUX/IAA family | 817 | 909 | IPR033389 | - | |
Clacu01g2567 | 954 | Pfam | Auxin response factor | 300 | 382 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Clacu01g2567 | 954 | CDD | B3_DNA | 173 | 274 | IPR003340 | GO:0003677(InterPro) | |
Clacu01g2567 | 954 | SUPERFAMILY | CAD & PB1 domains | 812 | 895 | - | - | |
Clacu01g2567 | 954 | Gene3D | - | 338 | 410 | - | - | |
Clacu01g2567 | 954 | MobiDBLite | consensus disorder prediction | 520 | 596 | - | - | |
Clacu01g2567 | 954 | FunFam | Auxin response factor | 338 | 410 | - | - | |
Clacu01g2567 | 954 | ProSiteProfiles | B3 DNA-binding domain profile. | 174 | 276 | IPR003340 | GO:0003677(InterPro) | |
Clacu01g2567 | 954 | MobiDBLite | consensus disorder prediction | 527 | 541 | - | - | |
Clacu01g2567 | 954 | FunFam | Auxin response factor | 172 | 276 | - | - | |
Clacu01g2567 | 954 | SUPERFAMILY | DNA-binding pseudobarrel domain | 159 | 303 | IPR015300 | - | |
Clacu01g2567 | 954 | Pfam | B3 DNA binding domain | 174 | 276 | IPR003340 | GO:0003677(InterPro) | |
Clacu01g2567 | 954 | Gene3D | - | 817 | 909 | - | - | |
Clacu01g2567 | 954 | ProSiteProfiles | PB1 domain profile. | 820 | 904 | IPR053793 | - | |
Clacu01g2567 | 954 | MobiDBLite | consensus disorder prediction | 604 | 623 | - | - | |
Clacu01g2567 | 954 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 67 | 911 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Clacu01g2567 | 954 | FunFam | Auxin response factor | 815 | 909 | - | - | |
Clacu01g2567 | 954 | Gene3D | - | 172 | 275 | IPR015300 | - | |
Clacu01g2567 | 954 | MobiDBLite | consensus disorder prediction | 542 | 596 | - | - | |
Clacu01g2567 | 954 | SMART | B3_2 | 174 | 276 | IPR003340 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g2567 | Clacu-Chr1:35910482 | Clacu11g0281 | Clacu-Chr11:2590416 | 4.20E-169 | dispersed | |
Clacu01g0831 | Clacu-Chr1:9144969 | Clacu01g2567 | Clacu-Chr1:35910482 | 3.50E-271 | transposed | |
Clacu05g2015 | Clacu-Chr5:29170340 | Clacu01g2567 | Clacu-Chr1:35910482 | 4.40E-174 | transposed | |
Clacu11g1335 | Clacu-Chr11:22767255 | Clacu01g2567 | Clacu-Chr1:35910482 | 3.10E-166 | transposed | |
Clacu01g2567 | Clacu-Chr1:35910482 | Clacu03g0651 | Clacu-Chr3:7105734 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47139 | PF02309 | AUX_IAA | 3.70E-07 | CL0072 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g2567 | K14486 | - | csv:101210406 | 1677.53 |