Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2567 ATGAAGTCGGCCATTGAAGAGTTGTCGAAACCGGCTTCGGCTGAGATTTTGGGCGGTGGGGGTTGGGTTGTGATATTCCCAGATGAGGTTCCACTGTTTGTTGTTTACTTTCTGAAGATTCAGATTGACTTGCTGGTCGATTTATGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCCCCGGAAGGGGAGGGGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGTGCGGGCCCTCTTGTTTCTCTACCTGCTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCACAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTCGATGCCCATATACCGAGTTATCCAAGCTTGCCGCCCCAACTTATCTGTCAGCTTCACAATGTTACAATGCATGCAGATGTTGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCGCTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCAGCTGAGTTGGGTGCCCCCAGCAAACAACCAACCAATTACTTTTGTAAAACATTAACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCACTGGACTTTTCTCAGCAGCCACCGGCTCAGGAGTTAATTGCCAGGGATCTGCACGATAATGAATGGAAATTTAGGCATATCTTTCGTGGCCAGCCCAAACGGCATCTTCTTACAACTGGATGGAGTGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCAGTTATCTTTATTTGGAATGAAAAAAATCAATTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTAATGCCCTCGTCCGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGCCGGTTCACGATATTTTATAATCCAAGGGCTAGCCCGTCAGAGTTCATCATACCTCTAGCCAAGTATGTCAAAGCTGTGTACCATACCCGTGTTTCAGTTGGTATGCGCTTTAGAATGCTATTTGAAACGGAAGAATCAAGTGTTCGTCGCTACATGGGCACTATTACTGGTATCGGTGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCCGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAGCCAAGGGTTTCCTTATGGGAGATCGAGCCACTTACAACCTTCCCAATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTTCCTTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTGAATTCTCAACTAATGTGGCTTCGGGGAGATGGTCTAGATCGTGGAATTCAACCTCTGAACTTCCCCGGAATTGGAGTTGCACCATGGATGCAGCCGAGGCTTGATGCTTCAATGGTGGGTCTGCAGCCAGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACTGTAGATCCTGCTAAGGTGCAGGCTGCTTCGCTTCTTCAATTCCAACAAACCCAAAATCTTCCCAACAGACCTACTTTCATGCCACCTCAGATGTTGCAGCCTCAGCCTCAACCTCAGCCTCCACAGACCTTTCTTCAAGGTGATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACCACCAGCAGCAGCAGCAGCAGCAACAACAACAGCAACAACCACAACAGCAAGTGTTTGATCACCAACAAATTCCAAGTCCCATATCTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAATCCCAATCCCTGCAAACTATTCCTCCATTATGTCGGCAGCAAAGTTTTTCTGATTCTAATGCCAACCATGTAACGAGTCCCATCATTTCACCCTTGCACAGCCTGTTAGGTTCATTTCCGCAAGATGAATCATCTCAGTTGCTTAATCTGCCTCGAACCAATCCCATGATACATTCATCTACTTGGCCGTCAAAGCGAGCTGCAGTGGATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTTCCCAAGGGGAAAACATGGGGACAACTCAGACTAATATCTCTCAGAATGCTATTTTGTTGCCGCCTTTTCCTGGAAGAGAGTGTTCATTAGATCAAGGGAATGCTGATCCGCAGAGTAATCTTCTCTTTGGTGTCAATATAGAGCCTTCATCTCTTTTAATGCAGAATGGCATGCCAAATCTTAGGGGAATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCATCCAATTATGTGAATACTGCTGGTAACAACTTCTCTGCCAGTCCAACTGGAACAGGGACACCTTCCAATTGCATTGAGGATTCAGGTTTCTTGCAGTCTCCAGAAAACACAGGCCAAGTAAACCCACCAACCAGAACCTTTGTAAAGGTTTACAAGTCGGGGTCCTTCGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCATCAGCTACGCAGTGAGCTCGCTCACATGTTCGGCCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGACGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAATTTGTCAACAGTGTGTGGTGTATCAAAATCCTTTCACCCGAGGAAGTGCAGGAGATGGGCAAACGCGGCCTAGAGCTCTTGAACTCAGTCCCGATTCAGAGGCTCTCAAATGGCAGTTGTGATAACTACGCCAATAGACAGGAATCATCCAGAAATTTGAGTACCGGGATAACTTCTGTCGGGTCTCTCGAGTACTGA 2865 47.12 MKSAIEELSKPASAEILGGGGWVVIFPDEVPLFVVYFLKIQIDLLVDLWLSTAGFSPQAPEGEGRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQPLNFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKVQAASLLQFQQTQNLPNRPTFMPPQMLQPQPQPQPPQTFLQGDENQHLSHSQAQSQPTVLQQEIKHQTFNNHQQQQQQQQQQQQPQQQVFDHQQIPSPISTMSQFSSASQSQSQSLQTIPPLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMIHSSTWPSKRAAVDPLLSSGNSQFVLSQGENMGTTQTNISQNAILLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTAGNNFSASPTGTGTPSNCIEDSGFLQSPENTGQVNPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAHMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPEEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 954
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 35910482 35915802 - ClG42_01g0256700.10 Clacu01g2567 241951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2567 954 Pfam AUX/IAA family 817 909 IPR033389 -
Clacu01g2567 954 Pfam Auxin response factor 300 382 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu01g2567 954 CDD B3_DNA 173 274 IPR003340 GO:0003677(InterPro)
Clacu01g2567 954 SUPERFAMILY CAD & PB1 domains 812 895 - -
Clacu01g2567 954 Gene3D - 338 410 - -
Clacu01g2567 954 MobiDBLite consensus disorder prediction 520 596 - -
Clacu01g2567 954 FunFam Auxin response factor 338 410 - -
Clacu01g2567 954 ProSiteProfiles B3 DNA-binding domain profile. 174 276 IPR003340 GO:0003677(InterPro)
Clacu01g2567 954 MobiDBLite consensus disorder prediction 527 541 - -
Clacu01g2567 954 FunFam Auxin response factor 172 276 - -
Clacu01g2567 954 SUPERFAMILY DNA-binding pseudobarrel domain 159 303 IPR015300 -
Clacu01g2567 954 Pfam B3 DNA binding domain 174 276 IPR003340 GO:0003677(InterPro)
Clacu01g2567 954 Gene3D - 817 909 - -
Clacu01g2567 954 ProSiteProfiles PB1 domain profile. 820 904 IPR053793 -
Clacu01g2567 954 MobiDBLite consensus disorder prediction 604 623 - -
Clacu01g2567 954 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 67 911 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu01g2567 954 FunFam Auxin response factor 815 909 - -
Clacu01g2567 954 Gene3D - 172 275 IPR015300 -
Clacu01g2567 954 MobiDBLite consensus disorder prediction 542 596 - -
Clacu01g2567 954 SMART B3_2 174 276 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2567 Clacu-Chr1:35910482 Clacu11g0281 Clacu-Chr11:2590416 4.20E-169 dispersed
Clacu01g0831 Clacu-Chr1:9144969 Clacu01g2567 Clacu-Chr1:35910482 3.50E-271 transposed
Clacu05g2015 Clacu-Chr5:29170340 Clacu01g2567 Clacu-Chr1:35910482 4.40E-174 transposed
Clacu11g1335 Clacu-Chr11:22767255 Clacu01g2567 Clacu-Chr1:35910482 3.10E-166 transposed
Clacu01g2567 Clacu-Chr1:35910482 Clacu03g0651 Clacu-Chr3:7105734 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47139 PF02309 AUX_IAA 3.70E-07 CL0072 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2567 K14486 - csv:101210406 1677.53