Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2591 ATGAAGGAGAGAGGAGGCTCTCTTGGAGGAGAGAGCCTGCCCGTTTGCTGCAAAAGGTCTATGGCGCTTGTCATGCACAAAGATTCATCGAACAAACAAATGGATTCAAGCAAATACGTACGGTATACACCCGAGCAAGTTGAGGCATTAGAGAGAGTTTATGCAGAATGTCCGAAGCCTAGTTCTCTCAGAAGGCAGCAGCTCATTAGAGAGTGCCCTATCCTTTCTAACATTGAGCCTAAGCAGATCAAAGTTTGGTTTCAAAATCGCAGATGCCGTGAGAAGCAGAGGAAGGAATCATCTCGCCTCCAGAGCGTAAATAGAAAGTTGTCTGCGATGAACAAATTGTTGATGGAGGAGAATGACCGTTTACAGAAGCAGGTGTCTCATTTGGTGTATGAGAATGGCTATATGCGCCAGCAACTGCATAATGCATCTGGGACGACTACAGACAATAGCTGTGAGTCTGTAGTCATGAGCGGTCAGCCTCAACAACAGCAAAACCCAAATCCTCAGCATTCCAATAGGGATGTTAACAACCCAGCTGGTCTTCTCGCGATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTTCCCGCAATTGCAGTGGCGTAGCAGCACGAGCCTGTGGTCTTGTTAGTCTAGAGCCAACAAAGGTTGCAGAAATTCTCAAAGATCGCCTTTCATGGTATCGTGACTGCCGCTGTCTTAATGTCTTAAGTGTAATTCCTACGGGAAATGGGGGAACAGTAGAGCTCATATATATGCAGACTTATGCTCCAACGACATTAGCAGCAGCACGTGACTTCTGGACTATGAGATATACAACAAGTTTAGAAGATGGCAGTCTAGTGGTTTGTGAGAGGTCATTATCTACTTCAAGTGGTGGTCCAGCAGGGCCTCCGCCATCTACTTTTGTAAGAGCTGAGATGCTTCCTAGTGGCTATTTAATACGAGCGTGCGAGGGTGGTGGATCTATTATTCACATTGTTGATCACATTGATTTGGATGTTTGGAGTGTCCCTGAAGTTCTTAGGCCACTTTATGAGTCATCCAAGATCCTTGCTCAGAAAATGACAATTGCTGCATTGCGTCACATTAGACAAATTGCTCAGGAGACTAATGGAGAAATTCAATGTACTGGTGGACGTCAACCAGCTGTACTGAGGACATTTAGTCAAAAACTTTGCAGGGGTTTTAACGATGCTGTCAACGGGTTTGCTGATGATGGTTGGTCACCTATGGGCAGTGATGGTGTGGAGGATGTGACAATTGTCATAAACTCATCAGCAAACAAGTTTCCTGGATCCCAGTACAACACGTCTTTGTATCCCTCTTTTGGCGGAGGAGTGATGTGTGCTAAAGCATCAATGTTGCTTCAGAATGTTCCCCCTGCTTTACTTGTTCGATTCCTGAGAGAGCATAGGTCTGAATGGGCTGATTATGGAGTTGATGCTTACTCTGCTGCAAGTTTAAAAGCCAGTCCGTATGCTGTTCCGTGTGCAAGGCCTGGTGGCTTCCCTAGCAGCCAAGTTATTTTGCCTCTTGCTCCTACTGTGGAGCACGAGGAGTTTTTGGAGGTGGTTCGGTTGGAGGGCCTTGCATTCTCTCCTGAAGATGTTGCTTTGGCTGGACGAGATATGTACTTATTGCAGCTCTGTAGTGGTGTTGATGAGAATGCAGTTGGAGCTTGTGCTCAGCTTGTGTTTGCACCTATAGATGAATCTTTTGCTGATGATGCTCCCCTACTTCCTTCAGGGTTTCGTGTCATACCGCTGGATCCGAAAACGGATGAGCCTACTGCTGCTAGAACACTGGATTTGGCCTCTACACTTGAAGTTGGTGCCAATGCTGCACGATCTGCTGGTGAAACTGATTTGAGCAGCTACAACCTTCGTTCAGTCTTGACTATTGCTTTCCAGTTCACCTTTGAGAATCACTTACAGGAAAATGTGGCTGCTATGGCTCGACAATATGTTCGTAGTGTTGTTGGGTCAGTTCAGAGGGTTGCCATGGCCATTTCCCCTTCGCGGTTGAGTTCCAGTACGGGACTTAAGCCTCTTCCTGGTTCTCCTGAAGCTCTCACTTTGGCTCGATGGATTTGCCGAAGCTACAGGATCCATGTTGGAGTTGAACTCCTTCAAACCGATTCCCAGTCTGGGGATGCCATGTTGAAGAAGCTCTGGCACCACTCCGACGCAATCATGTGTTGCTCTGTTAAAACCAACGCATCTGCTGTGTTCACCTTTGCTAACCAGGCTGGTCTGGACATGCTTGAAACCACTCTTGTTGGCCTGCAAGATATAATGCTGGACAAAATTCTCGATGAGGCGGGTCGGAAGATTCTTTGCTCTGAGTTCCCCAAAATAATGCAGCAGGGGTTCGCAAATCTTCCCTCGGGCATTTGCATATCCAGCATGGGCCATCCCATTTCTTATGAGCAAGCCATTGCCTGGAAGGTTCTAAATGATGATGATTCCAATCACTGTCTAGCTTTCATGTTCATCAACTGGTCCTTTGTTTGA 2604 46.97 MKERGGSLGGESLPVCCKRSMALVMHKDSSNKQMDSSKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQSVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHNASGTTTDNSCESVVMSGQPQQQQNPNPQHSNRDVNNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRLSWYRDCRCLNVLSVIPTGNGGTVELIYMQTYAPTTLAAARDFWTMRYTTSLEDGSLVVCERSLSTSSGGPAGPPPSTFVRAEMLPSGYLIRACEGGGSIIHIVDHIDLDVWSVPEVLRPLYESSKILAQKMTIAALRHIRQIAQETNGEIQCTGGRQPAVLRTFSQKLCRGFNDAVNGFADDGWSPMGSDGVEDVTIVINSSANKFPGSQYNTSLYPSFGGGVMCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAASLKASPYAVPCARPGGFPSSQVILPLAPTVEHEEFLEVVRLEGLAFSPEDVALAGRDMYLLQLCSGVDENAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLDPKTDEPTAARTLDLASTLEVGANAARSAGETDLSSYNLRSVLTIAFQFTFENHLQENVAAMARQYVRSVVGSVQRVAMAISPSRLSSSTGLKPLPGSPEALTLARWICRSYRIHVGVELLQTDSQSGDAMLKKLWHHSDAIMCCSVKTNASAVFTFANQAGLDMLETTLVGLQDIMLDKILDEAGRKILCSEFPKIMQQGFANLPSGICISSMGHPISYEQAIAWKVLNDDDSNHCLAFMFINWSFV 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36186020 36191565 - ClG42_01g0259100.10 Clacu01g2591 241975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2591 867 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 32 867 IPR044830 GO:0003700(InterPro)
Clacu01g2591 867 FunFam Homeobox-leucine zipper protein REVOLUTA 38 93 - -
Clacu01g2591 867 SUPERFAMILY Bet v1-like 187 398 - -
Clacu01g2591 867 CDD START_ArGLABRA2_like 181 397 - -
Clacu01g2591 867 Gene3D - 220 405 IPR023393 -
Clacu01g2591 867 SMART START_1 186 396 IPR002913 GO:0008289(InterPro)
Clacu01g2591 867 SUPERFAMILY Homeodomain-like 37 99 IPR009057 -
Clacu01g2591 867 Pfam Homeodomain 38 96 IPR001356 GO:0003677(InterPro)
Clacu01g2591 867 SMART HOX_1 35 101 IPR001356 GO:0003677(InterPro)
Clacu01g2591 867 MobiDBLite consensus disorder prediction 144 179 - -
Clacu01g2591 867 Pfam MEKHLA domain 722 866 IPR013978 -
Clacu01g2591 867 ProSiteProfiles 'Homeobox' domain profile. 33 97 IPR001356 GO:0003677(InterPro)
Clacu01g2591 867 CDD bZIP 90 129 - -
Clacu01g2591 867 Gene3D - 29 105 - -
Clacu01g2591 867 ProSiteProfiles START domain profile. 177 405 IPR002913 GO:0008289(InterPro)
Clacu01g2591 867 Pfam START domain 187 394 IPR002913 GO:0008289(InterPro)
Clacu01g2591 867 Coils Coil 103 127 - -
Clacu01g2591 867 CDD homeodomain 38 98 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2591 Clacu-Chr1:36186020 Clacu02g0189 Clacu-Chr2:1769521 5.50E-19 dispersed
Clacu01g1419 Clacu-Chr1:25707401 Clacu01g2591 Clacu-Chr1:36186020 0.00E+00 transposed
Clacu02g2173 Clacu-Chr2:34873527 Clacu01g2591 Clacu-Chr1:36186020 0.00E+00 transposed
Clacu09g0014 Clacu-Chr9:223915 Clacu01g2591 Clacu-Chr1:36186020 0.00E+00 transposed
Clacu11g1692 Clacu-Chr11:28173219 Clacu01g2591 Clacu-Chr1:36186020 0.00E+00 transposed
Clacu01g2591 Clacu-Chr1:36186020 Clacu03g0631 Clacu-Chr3:6645556 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47141 PF01852 START 1.20E-48 CL0209 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2591 K09338 - csv:101210154 1636.31