Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2592 ATGATGGCATGCCCTAATCAAGTTTCATTTGGTGTGCACTGCAATCCCATGACTTCTTCTATCCATGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCAGAATCATTCTTCATCAATCGTAAATGGACTAAGTCAACCCACCATCGTAACTCCAAATCAGTATGTAACATCTCCTCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGCGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATATTTGCATGAATCTCGACACCTGCATGCATTAAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAGTCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGCACATCTCAACAATTGTAAGGAAATTGAGGTCCCAATACCAGCTTCAGTTGTCTTAATTGGCACAGTACATAGTAACGCTGATGTTGCTGAAACTTTTATGGGAAGCTTTGTAATGGAAGGAGATGGAGTCGACAAGAGGAAACTACCTGAACATCCTTTTTTTCTCAAGAAACCTGAACATCTTTTGGGACTGGATCTAAGTGTTGACAGTTTTCTCTTATTTGCTTGTTCCTGCATTGAAGTAGCAGAAGAAGAAATGAGATTCTGTGGAGTCCCTATCAAAGGGCCATTCCTTGGAAATCAAACACTTTCTTTTGCTCATGGTCCTCTCCTGGTCAAGCCACTCTAA 948 42.72 MMACPNQVSFGVHCNPMTSSIHDYSDNGEADEQQKYSGSQNHSSSIVNGLSQPTIVTPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASAHLNNCKEIEVPIPASVVLIGTVHSNADVAETFMGSFVMEGDGVDKRKLPEHPFFLKKPEHLLGLDLSVDSFLLFACSCIEVAEEEMRFCGVPIKGPFLGNQTLSFAHGPLLVKPL 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36199257 36205716 - ClG42_01g0259200.10 Clacu01g2592 241976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2592 315 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 129 184 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g2592 315 ProSiteProfiles NF-YA/HAP2 family profile. 127 187 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g2592 315 MobiDBLite consensus disorder prediction 31 51 - -
Clacu01g2592 315 ProSitePatterns NF-YA/HAP2 subunit signature. 132 152 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Clacu01g2592 315 PRINTS CCAAT-binding transcription factor subunit B signature 130 152 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g2592 315 PRINTS CCAAT-binding transcription factor subunit B signature 161 184 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g2592 315 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 26 196 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Clacu01g2592 315 SMART cbf3 126 187 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g2592 315 Gene3D - 127 188 - -
Clacu01g2592 315 MobiDBLite consensus disorder prediction 23 51 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2592 K08064 - - csv:101205549 317.005
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2592 Clacu-Chr1:36199257 Clacu02g2363 Clacu-Chr2:36662381 2.60E-27 dispersed
Clacu01g2592 Clacu-Chr1:36199257 Clacu09g0409 Clacu-Chr9:3617165 1.10E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu02g2363 . 150 403 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.2 8.3e-54 207.6
Clacu03g1359 . 58 231 CCAAT-HAP2 Transcription Factor Family AT3G20910 60.8 1.6e-45 180.3
Clacu01g2592 . 17 193 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.8 4.0e-47 184.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47142 PF02045 CBFB_NFYA 8.70E-26 No_clan Clacu TF