Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2592 ATGATGGCATGCCCTAATCAAGTTTCATTTGGTGTGCACTGCAATCCCATGACTTCTTCTATCCATGATTATTCTGATAATGGTGAGGCTGATGAGCAGCAAAAGTACTCTGGATCTCAGAATCATTCTTCATCAATCGTAAATGGACTAAGTCAACCCACCATCGTAACTCCAAATCAGTATGTAACATCTCCTCAAGTTGGAGCAGGACATGCTATGGCACCCCCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGATGCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCGATGGTCCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGCGCAAAAGCTGAATCCGAAAATAAAGCCCTAAAGTCTAGGAAGCCATATTTGCATGAATCTCGACACCTGCATGCATTAAGGAGAGCTAGAGGTTGTGGTGGACGGTTTCTCAAGTCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGCACATCTCAACAATTGTAAGGAAATTGAGGTCCCAATACCAGCTTCAGTTGTCTTAATTGGCACAGTACATAGTAACGCTGATGTTGCTGAAACTTTTATGGGAAGCTTTGTAATGGAAGGAGATGGAGTCGACAAGAGGAAACTACCTGAACATCCTTTTTTTCTCAAGAAACCTGAACATCTTTTGGGACTGGATCTAAGTGTTGACAGTTTTCTCTTATTTGCTTGTTCCTGCATTGAAGTAGCAGAAGAAGAAATGAGATTCTGTGGAGTCCCTATCAAAGGGCCATTCCTTGGAAATCAAACACTTTCTTTTGCTCATGGTCCTCTCCTGGTCAAGCCACTCTAA 948 42.72 MMACPNQVSFGVHCNPMTSSIHDYSDNGEADEQQKYSGSQNHSSSIVNGLSQPTIVTPNQYVTSPQVGAGHAMAPPAYPYPDPYYRSIFTPYDAQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASAHLNNCKEIEVPIPASVVLIGTVHSNADVAETFMGSFVMEGDGVDKRKLPEHPFFLKKPEHLLGLDLSVDSFLLFACSCIEVAEEEMRFCGVPIKGPFLGNQTLSFAHGPLLVKPL 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36199257 36205716 - ClG42_01g0259200.10 Clacu01g2592 241976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2592 315 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 129 184 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g2592 315 ProSiteProfiles NF-YA/HAP2 family profile. 127 187 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g2592 315 MobiDBLite consensus disorder prediction 31 51 - -
Clacu01g2592 315 ProSitePatterns NF-YA/HAP2 subunit signature. 132 152 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Clacu01g2592 315 PRINTS CCAAT-binding transcription factor subunit B signature 130 152 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g2592 315 PRINTS CCAAT-binding transcription factor subunit B signature 161 184 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g2592 315 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 26 196 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Clacu01g2592 315 SMART cbf3 126 187 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g2592 315 Gene3D - 127 188 - -
Clacu01g2592 315 MobiDBLite consensus disorder prediction 23 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2592 Clacu-Chr1:36199257 Clacu02g2363 Clacu-Chr2:36662381 2.60E-27 dispersed
Clacu01g2592 Clacu-Chr1:36199257 Clacu09g0409 Clacu-Chr9:3617165 1.10E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47142 PF02045 CBFB_NFYA 8.70E-26 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2592 K08064 - csv:101205549 317.005