Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2594 ATGAATAATCGCACACTGGAACTTGGGAGGCCTGGCTCAGGCAAAAGAAGATTAAGGGACCTATTGCTTCTAAAGGATAATCGCTTTTGTGCAGATTGTCGCGCTGCAGATCCTAAATGGGCGTCAGCAAATATTGGAGTTTTTATATGCTTGAAATGTTGTGGTGTTCACAGAAGCCTCGGTTCACATATATCAAAGGTGTTATCAGTGACGTTGGATGAATGGAATGATGATGAAATTGACGCCATGATAGAAGTTGGAGGAAATTCTTCTGCAAATGCTATTTATGAAGCCTTTATTCCTGAGGGATATTCAAAACCTGGACCAGATGCTACCCATGAACAACGTTCAAAATTTATTCGGTCCAAATATGAACTTCAAGAATTTCTGAAACCGAGCTTGAGAATTTTATCATCCAACTCTGACAAAAGCAATATCCAAGCAAGCTTTTCTTCAAAGATCATGAACAGTTTTCGTTCAAATCCTTCACAAAAATCACTATCGCAGGAAGGTATGGTAGAGTATATTGGATTATTGAAGGTCAAAGTGATTAAAGGAACAAACTTAGCTATCAGGGATATGATGTCTAGCGATCCTTATGTAGTCATGACTCTTGGACAACAGACTGTCCAGACAAGTGTAGTCAGGAGCAACTTGAATCCTGTGTGGAATGAGGAACTGACGCTATCTGTACCTCAAGGTTTTGGAACCATAAAGTTGCAAGTATACGATTATGACACATTTTCAGCAGATGACATAATGGGAGAAGCAGAGATTGATCTCCAGCCCTTGATAACATCCGCCATGGCATTTGGAGATGCTGGAATGTTTTCAAACATGCAAATTGGAAAATGGCTGAAATCGCATGATAACGCTCTCATAGCCGATAGCACCGTTAATATTGTTGATGGGAAGGTGAAGCAAGAGATATCACTCAAGCTTCAGAATGTGGAATCAGGAGAACTAGATCTAGAGCTTGAATGGATGGCTCTTGAACAATAG 1002 40.22 MNNRTLELGRPGSGKRRLRDLLLLKDNRFCADCRAADPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDEWNDDEIDAMIEVGGNSSANAIYEAFIPEGYSKPGPDATHEQRSKFIRSKYELQEFLKPSLRILSSNSDKSNIQASFSSKIMNSFRSNPSQKSLSQEGMVEYIGLLKVKVIKGTNLAIRDMMSSDPYVVMTLGQQTVQTSVVRSNLNPVWNEELTLSVPQGFGTIKLQVYDYDTFSADDIMGEAEIDLQPLITSAMAFGDAGMFSNMQIGKWLKSHDNALIADSTVNIVDGKVKQEISLKLQNVESGELDLELEWMALEQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36212717 36216459 + ClG42_01g0259400.10 Clacu01g2594 241978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2594 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Clacu01g2594 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
Clacu01g2594 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Clacu01g2594 333 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Clacu01g2594 333 Gene3D C2 domain 174 333 IPR035892 -
Clacu01g2594 333 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
Clacu01g2594 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096(InterPro)
Clacu01g2594 333 Gene3D Arf GTPase activating protein 6 135 IPR038508 -
Clacu01g2594 333 SMART C2_3c 178 273 IPR000008 -
Clacu01g2594 333 CDD ArfGap 27 124 - -
Clacu01g2594 333 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Clacu01g2594 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 2 333 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Clacu01g2594 333 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 175 333 - -
Clacu01g2594 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 177 321 IPR035892 -
Clacu01g2594 333 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Clacu01g2594 333 CDD C2_ArfGAP 176 320 - -
Clacu01g2594 333 Pfam C2 domain 177 265 IPR000008 -
Clacu01g2594 333 ProSiteProfiles C2 domain profile. 159 274 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2594 Clacu-Chr1:36212717 Clacu06g1534 Clacu-Chr6:26251364 1.00E-34 dispersed
Clacu01g0776 Clacu-Chr1:8411758 Clacu01g2594 Clacu-Chr1:36212717 1.10E-90 transposed
Clacu01g1561 Clacu-Chr1:27717900 Clacu01g2594 Clacu-Chr1:36212717 3.60E-24 transposed
Clacu05g2878 Clacu-Chr5:35942165 Clacu01g2594 Clacu-Chr1:36212717 3.00E-89 transposed
Clacu11g2031 Clacu-Chr11:31274313 Clacu01g2594 Clacu-Chr1:36212717 1.50E-24 transposed
Clacu01g2594 Clacu-Chr1:36212717 Clacu03g0630 Clacu-Chr3:6637998 1.50E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2594 K12486 - csv:101218116 636.336