Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2599 ATGGGGAAGTTTCTAATCCGGAAATGCTTGATTTCGTTACTACTTCTGATAATTTCTGAGTATCTACAAACTGGAGATGCTGAATCCAATTCTCTTTTCATCAACTGCGGTTCAAGTTCAAATGAAACTGCCGATGGGAGGAAATGGATTGGCGACCTGACTTCAGAAGGGAACTTTTCTGTGGGCAATCTTGGAGCTACTATTAATGCCTCCATAGCCACTTTAAACGGCGATTCTGTCTTTGAGCCGCTGTATAAAACTGCTCGGATATTTACTAATTCCCTGAACTATACTTTTAAAGGTTTTCGGGGTAATCATGTTGTTCGGCTTCATTTCTGCCCCTTTCCTTTTGAGAATCTCAATGTGAACGAGTCATCATTTTCTGTCTCAGCCAATGGTCTTAGATTAGTTTCAGAGTTCAGCGTTCCCGATGAGATTGCATATAAGAATATGGAGTTTCAGCGTTCTGGGGTCAATTCAAGTTCATTCTCTTTGATTAAAGAGTTCATTATTTCTGTCAATTCAGAAGTACTTGTTCTTGAGTTTTCCCCTTCTGGGGGATCATTTGGGTTCGTTAATGCTATTGAAATTGTTCCCCTGGTGGATGAGCTTTTTGGAGGTTCCATTGATAAGGTGGGTGGAAGTGCTGTTAGTTTGAATGTGAGTGAAAGGGGAACTGAAACTATGTACAGGTTGAATGTTGGAGGGCCTGTGATCAAGCCCACTCAAGATTCAGATCTTTGGAGAATGTGGGAAGTGGACTCGAGTTATATGATTACAGCAAATGCTGGGTCTGAGATACATAACAGTTCTAATGTAACATATGCTTCCACGAATGACTCCATTGTAGCTCCTCTCCCTGTGTATGAAACAGCCAGAACGATGTCTGAGACTGAAGTGCTCGAGAAAAGGTTCAACATGTCGTGGAAATTCGAAATTCATCCCGGTTTTGAGTATTTGATCAGATTGCATTTCTGTGAGCTGCTGTATGAGAAGGCAAGAGAGAGGGTTTTCAAGATTTACATAAACAACAGGACTGCAGTTGAGAGTTTTGATGTGTTTGTACGAGCGGGGGGAATGAACAGAGCATATCATGTGGATTTCCTTGAACCAATATCGTCCAAAATCAACACCCTTTGGATTCAATTAGGCCCTGATACGGCTGCAGGTGCTGCAGGAACAGATGCTCTCTTGAATGGTCTGGAAATTTTCAAGTTGAGTCAAAATGGGAATCTTGCGTACATTGACAGGTTTAATGCCTTGGAGGAATCGACGGGAAACTCGAAATCTCAAATTCTTTGGATAGGCATTGGAGCAGGTTTAGCATCTGTTGTTTTCCTTGCTGTTATTACCATTCTCATCATCTATTTCTGCAGAATCCGGAGAAGGAATTTCACTAAGAAGAACTCTTCTAGGTGGAGAGCAGGATCCAGCCATGGGGCCACTGTCACCAACACTTATGCCAGAGGGTCCTCGGGGGGAGGCCAAAGTGTATTTGGGACCTTGCCATCTGTCAGAGTTGGCAAATGGTTTACCTTAGCAGAGATTCTTGCAGCGACAGATAACTTCGATGAAGCTCTGATGATCGGAGTTGGCGGTTTTGGTAAGGTCTACAGGGGGGAGATTGATGATGGTACACTTGTGGCAATCAAGAGAGCAAATCCACAGTCTCAGCAGGGACTTGCGGAGTTCGAGACCGAAATCGAAATGCTTTCTAAACTTAGGCATAGGCATCTGGTCTCCATGATTGGCTTTTGCGACGAGCAAAAGGAAATGATCTTGGTTTACGAATATATGGCGAATGGCACTCTTAGAAGCCATCTCTTTGGGAGTAATCTCCCACCTTTGACATGGAAGCAACGATTGGAAGTGTGCATTGGTGCAGCCAGGGGACTCCATTACCTTCACACAGGAGCTGAGAGAGGAATAATCCACAGAGATGTCAAGACGACCAACATACTCTTGGATGAAAACTTTGTTGCAAAAATGTCTGATTTTGGTCTTTCAAAAACAGGTCCTGCTTTGGATCATACCCATGTTAGTACTGCAGTTAAGGGCAGCTTCGGCTACCTTGATCCGGAGTATTTCAGGCGCCAGCAGCTGAGTGAAAAATCTGATGTCTATTCTTTTGGCGTGGTGTTGTTAGAAGTTGTTTGTGCACGAGCTGTTATAAACCCAAGTTTGCCCAAGGATCAGATAAATCTTGCAGAATGGGCAATGAAATGGCAACGCAAAAAGTTGCTGCACTCCATCATAGACCCACATCTCAAAGACAAATATTGTCCCGAGTCTCTGAAAACATTTGGAGAGATAGCAGAAAAATGCCTTGCTGATGAAGGGAAGATTCGTCCAACAATGGGGGAAGTTCTATGGCACCTAGAATATGCCCTCCAACTCCATGATGCTTGGATCCGCACTAATGATGCTCAAAGTTCATGCACAGTAAACTTAGAAGGAGCACAAGCTGAGGAACAGAGGCTAGATCTTGATGGGGAAGAGGAAGGCTCCAACATGAACGCTTCAATTCCAACTGATCACTTATCCTAA 2547 43.62 MGKFLIRKCLISLLLLIISEYLQTGDAESNSLFINCGSSSNETADGRKWIGDLTSEGNFSVGNLGATINASIATLNGDSVFEPLYKTARIFTNSLNYTFKGFRGNHVVRLHFCPFPFENLNVNESSFSVSANGLRLVSEFSVPDEIAYKNMEFQRSGVNSSSFSLIKEFIISVNSEVLVLEFSPSGGSFGFVNAIEIVPLVDELFGGSIDKVGGSAVSLNVSERGTETMYRLNVGGPVIKPTQDSDLWRMWEVDSSYMITANAGSEIHNSSNVTYASTNDSIVAPLPVYETARTMSETEVLEKRFNMSWKFEIHPGFEYLIRLHFCELLYEKARERVFKIYINNRTAVESFDVFVRAGGMNRAYHVDFLEPISSKINTLWIQLGPDTAAGAAGTDALLNGLEIFKLSQNGNLAYIDRFNALEESTGNSKSQILWIGIGAGLASVVFLAVITILIIYFCRIRRRNFTKKNSSRWRAGSSHGATVTNTYARGSSGGGQSVFGTLPSVRVGKWFTLAEILAATDNFDEALMIGVGGFGKVYRGEIDDGTLVAIKRANPQSQQGLAEFETEIEMLSKLRHRHLVSMIGFCDEQKEMILVYEYMANGTLRSHLFGSNLPPLTWKQRLEVCIGAARGLHYLHTGAERGIIHRDVKTTNILLDENFVAKMSDFGLSKTGPALDHTHVSTAVKGSFGYLDPEYFRRQQLSEKSDVYSFGVVLLEVVCARAVINPSLPKDQINLAEWAMKWQRKKLLHSIIDPHLKDKYCPESLKTFGEIAEKCLADEGKIRPTMGEVLWHLEYALQLHDAWIRTNDAQSSCTVNLEGAQAEEQRLDLDGEEEGSNMNASIPTDHLS 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36259009 36261555 + ClG42_01g0259900.10 Clacu01g2599 241983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2599 848 MobiDBLite consensus disorder prediction 827 848 - -
Clacu01g2599 848 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524(InterPro)
Clacu01g2599 848 PANTHER OS07G0166700 PROTEIN 511 800 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Clacu01g2599 848 FunFam receptor-like protein kinase FERONIA 492 598 - -
Clacu01g2599 848 CDD STKc_IRAK 529 794 - -
Clacu01g2599 848 Gene3D Phosphorylase Kinase; domain 1 501 598 - -
Clacu01g2599 848 FunFam FERONIA receptor-like kinase 31 201 - -
Clacu01g2599 848 SMART serkin_6 523 796 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2599 848 Gene3D - 27 200 - -
Clacu01g2599 848 Gene3D - 224 408 - -
Clacu01g2599 848 ProSiteProfiles Protein kinase domain profile. 523 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2599 848 SUPERFAMILY Protein kinase-like (PK-like) 502 795 IPR011009 -
Clacu01g2599 848 Gene3D Transferase(Phosphotransferase) domain 1 599 817 - -
Clacu01g2599 848 Pfam Malectin-like domain 34 405 IPR024788 -
Clacu01g2599 848 FunFam Receptor-like protein kinase FERONIA 225 408 - -
Clacu01g2599 848 FunFam Receptor-like protein kinase FERONIA 599 813 - -
Clacu01g2599 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2599 848 Pfam Protein tyrosine and serine/threonine kinase 528 790 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2599 Clacu-Chr1:36259009 Clacu06g1704 Clacu-Chr6:27730325 2.00E-178 dispersed
Clacu01g2599 Clacu-Chr1:36259009 Clacu11g2025 Clacu-Chr11:31231577 1.70E-193 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73301 PF12819 Malectin_like 8.80E-32 CL0202 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2599 - - - 0.0