Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2600 ATGGAAGCGGTGGCAGACACCAAAGCAAAGATGTTGCTAACGCTAACCACGTGGAAATCAAAGCGAGTAAAAATCAAGCTCCCCAAAGAAGCAAAGGAAGAAAATCACAAAACGATCAATAACAACAACGAGGATGAACGAGAGGAGAATTTGGAAGATGAGGGAGGCTCGACACAAATAAAACAACGAGAAGTTATTTATGGATCTCATCTAGTACAAGGCAAAATGAATCATGGAATGGAAGACTATATCGTTACCGAAGAACGACATGTCGACAACCACATGCTGGGACTATTTGCAATATTTGATGGCCACTCCGGTCGCGATGTCACAGAGTACTTGCAGAGCCATCTGTTTGATAACATCTTAAGCCAGTCTGATTTCTGGGAAGACCCTGAAGGAGCAATCAGGAGAGCATATAAAGCAACAGATGAGGAGATTTTAGCTAAAAAAGTGGGAAAGAGAGGAGGTTCAACAGCAGTTACAGCTATACTAATAGATGGGCAGAAGCTAATCGTCGCACACGTAGGCGACTCACGGGCGGTGATATGCAGGAATGGCTCAGCAAAACCGATTACGGTCGATCACGAACCAGAGGAGGAGAAGGAGCTTGTTGAGAGCCGAGGTGGATTTGTTGTACAAATGCCAGGAAGTGTGCCACGGGTGGATGGTCAGCTAGCAATGTCAAGGGCATTTGGTGATGCAAGGCTGAAAGAACACATTACTTCAGAACCAGATATCAGGATCCTCACAATTGACAATGAGACTGAGTTCACCATTTTGGCCAGTGATGGCCTCTGGAAGGTAATGTCAAACCAGGAGGCTTGTGATTGCATCAGAGAAATGGGAATGGATCCTCAAAAGGCTTCAGAGGAATTGATTAAAGAGGCATTGTCTAAAATGAGCTACGATGACATTTCCTGCGTTGTAGTTACCTTCCACTGA 945 44.87 MEAVADTKAKMLLTLTTWKSKRVKIKLPKEAKEENHKTINNNNEDEREENLEDEGGSTQIKQREVIYGSHLVQGKMNHGMEDYIVTEERHVDNHMLGLFAIFDGHSGRDVTEYLQSHLFDNILSQSDFWEDPEGAIRRAYKATDEEILAKKVGKRGGSTAVTAILIDGQKLIVAHVGDSRAVICRNGSAKPITVDHEPEEEKELVESRGGFVVQMPGSVPRVDGQLAMSRAFGDARLKEHITSEPDIRILTIDNETEFTILASDGLWKVMSNQEACDCIREMGMDPQKASEELIKEALSKMSYDDISCVVVTFH 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36262009 36264472 - ClG42_01g0260000.10 Clacu01g2600 241984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2600 314 FunFam Probable protein phosphatase 2C 39 56 314 - -
Clacu01g2600 314 Pfam Protein phosphatase 2C 77 305 IPR001932 -
Clacu01g2600 314 MobiDBLite consensus disorder prediction 29 45 - -
Clacu01g2600 314 PANTHER PROTEIN PHOSPHATASE 45 311 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu01g2600 314 SUPERFAMILY PP2C-like 65 314 IPR036457 -
Clacu01g2600 314 ProSiteProfiles PPM-type phosphatase domain profile. 66 313 IPR001932 -
Clacu01g2600 314 Gene3D - 33 314 IPR036457 -
Clacu01g2600 314 SMART PP2C_4 62 311 IPR001932 -
Clacu01g2600 314 Coils Coil 29 49 - -
Clacu01g2600 314 MobiDBLite consensus disorder prediction 29 58 - -
Clacu01g2600 314 CDD PP2Cc 65 313 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2600 Clacu-Chr1:36262009 Clacu11g1978 Clacu-Chr11:30743185 5.20E-84 dispersed
Clacu01g2600 Clacu-Chr1:36262009 Clacu07g0239 Clacu-Chr7:2805238 3.60E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2600 K14803 - csv:101211141 477.248