Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2621 ATGTTGTTGTTGTTTGAGATGGAGAATTATGAAGAAGGTGATTTGACTGATATTGTGAGAGGAGGAAGCTCAAGATCAAGATCAACAACAAGAAGCTCCACTTCTCATTGCAAAACGGAATTGGGTGATCAAGATGAAGATCAAGATTCTCCCTTTTATTCTTCATCACAAGATAACAATTACAATCCTCAGTGGAGTAGCTCCCAATTTTCATCACAACTACTACTACTACAAGATCATCATCATCATCATCATCATCAATACAGTTTTGGGGATCCATTTTGTAGTACTGTTGCTGCTTCACTTGATCTTCATCAAGAGCTGGATAATACTAATAATAATACTTTTTTCAATGGAATTACTACTACTACTACTACTTCTACTCAAGATGAGCTTATCAAAACGCCTTCTTCTTCCAATATTTTCTCACGTATGCTTCAGATCTCTCCTTCACCCGACAAATTCCCAACCATTTCTTCACTTAATTCCTCTTCTAATTTCCTAATTCCCAATCATTCTCTTAACTCTCCCACCACTCCACATTCTGATCACCTTCATCATTTTCTTCATCATAATGATAATAATCCCTCCCCCTCCGCCCTTCACATCTCTTCTCCTCGCAATCCACCCGGTATCAAGCGAAGGAAGAGCCAAGCAAGGAAAGTGGTTTGTGTTCCAGCTCCAGTGGCTGCTAGTAGTAGACCAAATGGGGAAGTTATTCCTTCTGATCTGTGGGCTTGGAGGAAATATGGTCAGAAACCCATTAAAGGCTCTCCATATCCTAGGGGGTACTATAGATGCAGCAGCTCAAAGGGATGCTCAGCAAGAAAACAAGTGGAGAGAAGTAGAACAGATCCAAACATGCTGGTGATTACTTACACATCTGAGCATAACCATCCATGGCCAACTCAAAGAAATGCTCTTGCTGGTTCTTCAAGGTCCCAACAATCTAAAAACAACAACATTACTACTACTACTTCTTCAACTTCAACAACAACACCAACACCCAATTCTTCAAAACTCTCTCAAGATCATCATCACAAAAATAAGGAAGAAAAAGAAGAGCATCAAGATCAAAACAATGGAACATTATTATCAGCTGCAGCAACAACAACATCAAATAACAATAATAATGTTAAGGAAGAGGAAACTGAGAACCATCATCATCAATCGATGATGAGTGAAGGGTTTGATGATGATCATGATTTCTTTGCAGATTTGGAAGAATTAGAAACAGACCCTTTAACTCTGTTGTTCACTACACAACAACCCCTTAAATTAGACCAAATCAAAGAATCAGCCACCACCACCCCCACTACTACTACAGGTTGCTTACACGACGTCGTTCCATTCAATAATCTATTTGATTGGCCACCACCTCCTCTAAACAACAATTCAACTCCATTTCATGAACAACCACCACCTACTACTCCTACCAACGGAGGTTTTTATTAA 1455 39.31 MLLLFEMENYEEGDLTDIVRGGSSRSRSTTRSSTSHCKTELGDQDEDQDSPFYSSSQDNNYNPQWSSSQFSSQLLLLQDHHHHHHHQYSFGDPFCSTVAASLDLHQELDNTNNNTFFNGITTTTTTSTQDELIKTPSSSNIFSRMLQISPSPDKFPTISSLNSSSNFLIPNHSLNSPTTPHSDHLHHFLHHNDNNPSPSALHISSPRNPPGIKRRKSQARKVVCVPAPVAASSRPNGEVIPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSSRSQQSKNNNITTTTSSTSTTTPTPNSSKLSQDHHHKNKEEKEEHQDQNNGTLLSAAATTTSNNNNNVKEEETENHHHQSMMSEGFDDDHDFFADLEELETDPLTLLFTTQQPLKLDQIKESATTTPTTTTGCLHDVVPFNNLFDWPPPPLNNNSTPFHEQPPPTTPTNGGFY 484
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 36359525 36362601 - ClG42_01g0262100.10 Clacu01g2621 242005
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2621 484 MobiDBLite consensus disorder prediction 258 396 - -
Clacu01g2621 484 SUPERFAMILY WRKY DNA-binding domain 240 302 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g2621 484 ProSiteProfiles WRKY domain profile. 236 302 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g2621 484 MobiDBLite consensus disorder prediction 380 396 - -
Clacu01g2621 484 MobiDBLite consensus disorder prediction 360 379 - -
Clacu01g2621 484 Pfam WRKY DNA -binding domain 243 300 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g2621 484 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 13 413 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu01g2621 484 MobiDBLite consensus disorder prediction 178 219 - -
Clacu01g2621 484 MobiDBLite consensus disorder prediction 21 37 - -
Clacu01g2621 484 MobiDBLite consensus disorder prediction 16 59 - -
Clacu01g2621 484 SMART WRKY_cls 241 301 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g2621 484 Gene3D WRKY domain 215 295 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g2621 484 MobiDBLite consensus disorder prediction 464 484 - -
Clacu01g2621 484 MobiDBLite consensus disorder prediction 285 340 - -
Clacu01g2621 484 FunFam probable WRKY transcription factor 14 215 295 - -
Clacu01g2621 484 MobiDBLite consensus disorder prediction 341 359 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0088 Clacu-Chr1:792167 Clacu01g2621 Clacu-Chr1:36359525 2.20E-32 dispersed
Clacu01g2621 Clacu-Chr1:36359525 Clacu03g0847 Clacu-Chr3:9981300 2.10E-52 dispersed
Clacu01g2621 Clacu-Chr1:36359525 Clacu05g0150 Clacu-Chr5:1412043 1.30E-38 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47143 PF03106 WRKY 2.80E-25 CL0274 Clacu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2621 - - - 0.0