Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g2622 | ATGGAGAAGAGGAAGAAGAAATTCGTCGACCCAATCATCTGCGGCCCTTTCCGGAGTCGACGTGGTCGCACGTTGCCGGCTGCAACCGGTAATGGACACGTGTCGGTAGCCTTTGATTGTATCGTCTACGCTATTCAACTCCGACGAGCCGGTGGCAGTTTCCGAAAAAGATCAACTACTGCCAACCAATACACCGACGAAAACTACTTCCCGAACAGACACCCGGCTTCAGCTTCCGATCGTGAACACTGCTCTTTTGTTCGTCTTCTTCACCCAGGAGGAGGTGATATAGGGACGGCTTCGAATTCTCAATCTATTTCATGTGAAATGAAACATTTGTATTCTTTTGTATTGCTCAGTTTCGTCATTGGCAGAATTTCATCTCATTTTGCAAGGAGTTGGTTTCAGAAGTTCCAAAATAGAGTAAAGAAGGAAACTGTAAGTGACAATGAGGTTCAAGATGTACCCTCAAGTGCAACGAAGCAGAAAGTTGAGGTTGCTAAGCAATATATCGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGACGTTGGGTGTTGGAGAGGAGGCTTGCTGATGCTGATGTTTCTGAGGAAGACCAAATAAACGTTCTTAAATATTTAGAACAGAAGGAGACAGAATACATGCGCCTTCGTAGACATAAAATGGGCGTTGATGACTTTGAACTTTTGACAATTATTGGAAGGGGTGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAGCCACAGGTCACGTGTATGCAATGAAGAAGCTTAAGAAATCTGAGATGCTTCGCAGGGGGCAGGTGGAACATGTTAAAGCTGAAAGAAATCTTTTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGCTCCTTTCAGGATGATGATTTTTTGTATCTTATAATGCAATATCTTCCTGGAGGTGATATGATGACCCTGTTAATGCGCAAGGATATTTTGACGGAGGATGAGGCCAGATTTTATGTTGGGGAAACAGTCCTTGCTATAGAGTCCATCCACAAGCATAATTACATTCACAGAGACATCAAGCCTGATAATTTACTGCTTGATCGTTATGGCCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGTAGTTTCCCTAATCTCACTGAGGAAGAAAAAGTAGTGGGGAAGAATGTCAGATCTTCCACCGAAAATGATAGTCAAATTAGTGCATCGAAACGGACACAACAAGAACAATTGTTACATTGGCAAAAGAACAGACGAACATTGGCTTATTCAGCTGTTGGAACGCCGGACTATATTGCCCCAGAAGTTTTATTGAGGAAAGGATATGGAATGGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTACGAAATGCTTGTGGGATTCCCACCTTTCTATTCTGATGATCCAATGTCTACATGTAGAAAGATTATTAACTGGAGAACTCATTTGAGATTCCCAACAGAAGCAAAATTGTCCATCGAGGCCAAAGATCTTATTTGCAAACTTCTATGCAATGTTGAGCAAAGGATTGGAACCAAAGGAGCTAAAGAAATTAAGGCGCATCCATGGTTTAAAGGTACACAATGGGATAAATTATATCAAATGGAAGCTGTTATCATTCCAGAGATTCAGGATGAGTTAGACACTCGAAATTTTGAGAAGTATGAAGAGCTGGGTGTGCCAGGTCAAACTCCATCAAAGTCGGGCCCTTTGAGAAAGAAGCTTTCACCCAAGGATGTGAACTTTGTTGGTTATACGTACAAGAATTTCGAAATTGTCAACGAACACCACTTGTCAGGCATTACTGAGATGAGGAAAAAGCCTATCAAGACCAAGAGACCATCTGTTACGACTCTATTTGGTACATTCACCGTTCTAAAATTTCTGACTAATGCAAGTTGCTGGTTTCCATTACATATTCTTACCTTCTGGCCTCTCTGTTTGGCTCTCTCTTTCCTTTCCTTAGCCACAGCAGATTCTTCGGAGCAGACTGTTCAAAGAAGTTATCCTAATCATTTGCCAACCCATCCCGAAGTCTCAGAAAGCCCCGATCCATCACCTCGTTCAACTGGATCACTGCAACAGCCGAAACGATTCTGCAATCTTTATTCACAATCACAGATTCTCACCCGGCTAGTTAGCCTTCTTGTGGGTTAG | 2190 | 42.33 | MEKRKKKFVDPIICGPFRSRRGRTLPAATGNGHVSVAFDCIVYAIQLRRAGGSFRKRSTTANQYTDENYFPNRHPASASDREHCSFVRLLHPGGGDIGTASNSQSISCEMKHLYSFVLLSFVIGRISSHFARSWFQKFQNRVKKETVSDNEVQDVPSSATKQKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADVSEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDDDFLYLIMQYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEEEKVVGKNVRSSTENDSQISASKRTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGMECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPTEAKLSIEAKDLICKLLCNVEQRIGTKGAKEIKAHPWFKGTQWDKLYQMEAVIIPEIQDELDTRNFEKYEELGVPGQTPSKSGPLRKKLSPKDVNFVGYTYKNFEIVNEHHLSGITEMRKKPIKTKRPSVTTLFGTFTVLKFLTNASCWFPLHILTFWPLCLALSFLSLATADSSEQTVQRSYPNHLPTHPEVSESPDPSPRSTGSLQQPKRFCNLYSQSQILTRLVSLLVG | 729 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 36375331 | 36384857 | - | ClG42_01g0262200.10 | Clacu01g2622 | 242006 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g2622 | 729 | CDD | MobB_NDR_LATS-like | 167 | 228 | - | - | |
Clacu01g2622 | 729 | ProSitePatterns | Protein kinases ATP-binding region signature. | 239 | 262 | IPR017441 | GO:0005524(InterPro) | |
Clacu01g2622 | 729 | FunFam | Non-specific serine/threonine protein kinase | 317 | 384 | - | - | |
Clacu01g2622 | 729 | Pfam | Protein kinase C terminal domain | 554 | 598 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu01g2622 | 729 | FunFam | Non-specific serine/threonine protein kinase | 204 | 316 | - | - | |
Clacu01g2622 | 729 | SMART | serkin_6 | 233 | 535 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu01g2622 | 729 | SMART | pkinase_C_6 | 536 | 600 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu01g2622 | 729 | ProSiteProfiles | Protein kinase domain profile. | 233 | 535 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu01g2622 | 729 | SUPERFAMILY | Protein kinase-like (PK-like) | 214 | 582 | IPR011009 | - | |
Clacu01g2622 | 729 | Pfam | Protein kinase domain | 432 | 535 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu01g2622 | 729 | Pfam | Protein kinase domain | 234 | 386 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Clacu01g2622 | 729 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 352 | 364 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Clacu01g2622 | 729 | Gene3D | Transferase(Phosphotransferase) domain 1 | 430 | 553 | - | - | |
Clacu01g2622 | 729 | Gene3D | Transferase(Phosphotransferase) domain 1 | 317 | 384 | - | - | |
Clacu01g2622 | 729 | FunFam | Non-specific serine/threonine protein kinase | 434 | 553 | - | - | |
Clacu01g2622 | 729 | CDD | STKc_NDR_like | 231 | 599 | - | - | |
Clacu01g2622 | 729 | Gene3D | Phosphorylase Kinase; domain 1 | 231 | 316 | - | - | |
Clacu01g2622 | 729 | Gene3D | Phosphorylase Kinase; domain 1 | 554 | 564 | - | - | |
Clacu01g2622 | 729 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 136 | 603 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Clacu01g2622 | 729 | MobiDBLite | consensus disorder prediction | 676 | 704 | - | - | |
Clacu01g2622 | 729 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 536 | 608 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g2622 | Clacu-Chr1:36375331 | Clacu06g0711 | Clacu-Chr6:8302975 | 1.40E-220 | dispersed | |
Clacu09g1597 | Clacu-Chr9:27587358 | Clacu01g2622 | Clacu-Chr1:36375331 | 1.30E-12 | dispersed | |
Clacu01g2622 | Clacu-Chr1:36375331 | Clacu05g1967 | Clacu-Chr5:28808871 | 5.60E-182 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
73302 | PF00069 | Pkinase | 4.70E-64 | CL0016 | Clacu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g2622 | K08790 | - | csv:101208438 | 1045.42 |