Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2622 ATGGAGAAGAGGAAGAAGAAATTCGTCGACCCAATCATCTGCGGCCCTTTCCGGAGTCGACGTGGTCGCACGTTGCCGGCTGCAACCGGTAATGGACACGTGTCGGTAGCCTTTGATTGTATCGTCTACGCTATTCAACTCCGACGAGCCGGTGGCAGTTTCCGAAAAAGATCAACTACTGCCAACCAATACACCGACGAAAACTACTTCCCGAACAGACACCCGGCTTCAGCTTCCGATCGTGAACACTGCTCTTTTGTTCGTCTTCTTCACCCAGGAGGAGGTGATATAGGGACGGCTTCGAATTCTCAATCTATTTCATGTGAAATGAAACATTTGTATTCTTTTGTATTGCTCAGTTTCGTCATTGGCAGAATTTCATCTCATTTTGCAAGGAGTTGGTTTCAGAAGTTCCAAAATAGAGTAAAGAAGGAAACTGTAAGTGACAATGAGGTTCAAGATGTACCCTCAAGTGCAACGAAGCAGAAAGTTGAGGTTGCTAAGCAATATATCGAAAACCATTACAAATCTCAAATGAAGTCATTGCAAGATAGGAAGGAGAGACGTTGGGTGTTGGAGAGGAGGCTTGCTGATGCTGATGTTTCTGAGGAAGACCAAATAAACGTTCTTAAATATTTAGAACAGAAGGAGACAGAATACATGCGCCTTCGTAGACATAAAATGGGCGTTGATGACTTTGAACTTTTGACAATTATTGGAAGGGGTGCATTTGGGGAGGTTAGACTTTGTAGAGAAAAAGCCACAGGTCACGTGTATGCAATGAAGAAGCTTAAGAAATCTGAGATGCTTCGCAGGGGGCAGGTGGAACATGTTAAAGCTGAAAGAAATCTTTTAGCAGAGGTTGACAGTGCCTACATTGTGAAGTTATACTGCTCCTTTCAGGATGATGATTTTTTGTATCTTATAATGCAATATCTTCCTGGAGGTGATATGATGACCCTGTTAATGCGCAAGGATATTTTGACGGAGGATGAGGCCAGATTTTATGTTGGGGAAACAGTCCTTGCTATAGAGTCCATCCACAAGCATAATTACATTCACAGAGACATCAAGCCTGATAATTTACTGCTTGATCGTTATGGCCACATTAAACTCTCAGATTTTGGGTTGTGTAAACCCTTGGAGTCTAGTAGTTTCCCTAATCTCACTGAGGAAGAAAAAGTAGTGGGGAAGAATGTCAGATCTTCCACCGAAAATGATAGTCAAATTAGTGCATCGAAACGGACACAACAAGAACAATTGTTACATTGGCAAAAGAACAGACGAACATTGGCTTATTCAGCTGTTGGAACGCCGGACTATATTGCCCCAGAAGTTTTATTGAGGAAAGGATATGGAATGGAGTGCGACTGGTGGTCCCTTGGTGCAATTATGTACGAAATGCTTGTGGGATTCCCACCTTTCTATTCTGATGATCCAATGTCTACATGTAGAAAGATTATTAACTGGAGAACTCATTTGAGATTCCCAACAGAAGCAAAATTGTCCATCGAGGCCAAAGATCTTATTTGCAAACTTCTATGCAATGTTGAGCAAAGGATTGGAACCAAAGGAGCTAAAGAAATTAAGGCGCATCCATGGTTTAAAGGTACACAATGGGATAAATTATATCAAATGGAAGCTGTTATCATTCCAGAGATTCAGGATGAGTTAGACACTCGAAATTTTGAGAAGTATGAAGAGCTGGGTGTGCCAGGTCAAACTCCATCAAAGTCGGGCCCTTTGAGAAAGAAGCTTTCACCCAAGGATGTGAACTTTGTTGGTTATACGTACAAGAATTTCGAAATTGTCAACGAACACCACTTGTCAGGCATTACTGAGATGAGGAAAAAGCCTATCAAGACCAAGAGACCATCTGTTACGACTCTATTTGGTACATTCACCGTTCTAAAATTTCTGACTAATGCAAGTTGCTGGTTTCCATTACATATTCTTACCTTCTGGCCTCTCTGTTTGGCTCTCTCTTTCCTTTCCTTAGCCACAGCAGATTCTTCGGAGCAGACTGTTCAAAGAAGTTATCCTAATCATTTGCCAACCCATCCCGAAGTCTCAGAAAGCCCCGATCCATCACCTCGTTCAACTGGATCACTGCAACAGCCGAAACGATTCTGCAATCTTTATTCACAATCACAGATTCTCACCCGGCTAGTTAGCCTTCTTGTGGGTTAG 2190 42.33 MEKRKKKFVDPIICGPFRSRRGRTLPAATGNGHVSVAFDCIVYAIQLRRAGGSFRKRSTTANQYTDENYFPNRHPASASDREHCSFVRLLHPGGGDIGTASNSQSISCEMKHLYSFVLLSFVIGRISSHFARSWFQKFQNRVKKETVSDNEVQDVPSSATKQKVEVAKQYIENHYKSQMKSLQDRKERRWVLERRLADADVSEEDQINVLKYLEQKETEYMRLRRHKMGVDDFELLTIIGRGAFGEVRLCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAYIVKLYCSFQDDDFLYLIMQYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHIKLSDFGLCKPLESSSFPNLTEEEKVVGKNVRSSTENDSQISASKRTQQEQLLHWQKNRRTLAYSAVGTPDYIAPEVLLRKGYGMECDWWSLGAIMYEMLVGFPPFYSDDPMSTCRKIINWRTHLRFPTEAKLSIEAKDLICKLLCNVEQRIGTKGAKEIKAHPWFKGTQWDKLYQMEAVIIPEIQDELDTRNFEKYEELGVPGQTPSKSGPLRKKLSPKDVNFVGYTYKNFEIVNEHHLSGITEMRKKPIKTKRPSVTTLFGTFTVLKFLTNASCWFPLHILTFWPLCLALSFLSLATADSSEQTVQRSYPNHLPTHPEVSESPDPSPRSTGSLQQPKRFCNLYSQSQILTRLVSLLVG 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36375331 36384857 - ClG42_01g0262200.10 Clacu01g2622 242006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2622 729 CDD MobB_NDR_LATS-like 167 228 - -
Clacu01g2622 729 ProSitePatterns Protein kinases ATP-binding region signature. 239 262 IPR017441 GO:0005524(InterPro)
Clacu01g2622 729 FunFam Non-specific serine/threonine protein kinase 317 384 - -
Clacu01g2622 729 Pfam Protein kinase C terminal domain 554 598 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2622 729 FunFam Non-specific serine/threonine protein kinase 204 316 - -
Clacu01g2622 729 SMART serkin_6 233 535 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2622 729 SMART pkinase_C_6 536 600 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2622 729 ProSiteProfiles Protein kinase domain profile. 233 535 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2622 729 SUPERFAMILY Protein kinase-like (PK-like) 214 582 IPR011009 -
Clacu01g2622 729 Pfam Protein kinase domain 432 535 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2622 729 Pfam Protein kinase domain 234 386 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2622 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2622 729 Gene3D Transferase(Phosphotransferase) domain 1 430 553 - -
Clacu01g2622 729 Gene3D Transferase(Phosphotransferase) domain 1 317 384 - -
Clacu01g2622 729 FunFam Non-specific serine/threonine protein kinase 434 553 - -
Clacu01g2622 729 CDD STKc_NDR_like 231 599 - -
Clacu01g2622 729 Gene3D Phosphorylase Kinase; domain 1 231 316 - -
Clacu01g2622 729 Gene3D Phosphorylase Kinase; domain 1 554 564 - -
Clacu01g2622 729 PANTHER SERINE/THREONINE-PROTEIN KINASE 136 603 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Clacu01g2622 729 MobiDBLite consensus disorder prediction 676 704 - -
Clacu01g2622 729 ProSiteProfiles AGC-kinase C-terminal domain profile. 536 608 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2622 Clacu-Chr1:36375331 Clacu06g0711 Clacu-Chr6:8302975 1.40E-220 dispersed
Clacu09g1597 Clacu-Chr9:27587358 Clacu01g2622 Clacu-Chr1:36375331 1.30E-12 dispersed
Clacu01g2622 Clacu-Chr1:36375331 Clacu05g1967 Clacu-Chr5:28808871 5.60E-182 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73302 PF00069 Pkinase 4.70E-64 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2622 K08790 - csv:101208438 1045.42