Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2628 ATGGATATTATTTACTGTGCACGTCTACTATGTGTTGTTGTCTGTTTTGGGATGTTTCTATGCGCATCTTGTCTTGACGAATTCGGTGATTCAACAGCTGTTTACATTGTAACTCTCAAGGAACCTCCTTCCACTACTCATTACTATGGTCAGCTTAGACAAAATACCACTTCTTTTAGGCTTAATACTTCTGGTGGATTAAGCATCCACAAACCAAGAAACATATCGAGAAAGCATCGAAGATATAGATCTTACATAGCCCGAGTTCATGATTCATTGTTGAAGAAGGTCTTGAAGGGGGAAAAATATCTAAAGCTGTACAGTTACCATTTCTTGATCAATGGATTTGCTGTGCTTGTTACCGAAGAACAGGCAAGTAAACTTTCAAAGAGGATAGAGGTGGCAAATGTTGTCATGGATTTCTCTGTTAGAACTGCTACGACCCACACTCCACAGTTCTTGGGCCTACCGCAGGGAGCTTGGTCTCAAGATGGTGGCTTTGAGTCTGCTGGAGCTGGGATTGTGATAGGGTTCATTGACACTGGCATTGATCCTTCGCACCCCAGCTTTGCTGATGATTTGACTGATAATCCGTTTCCCATTCCGGCTCACTTCTCTGGAATCTGTGAGGTAACTCCAGATTTTCCATCTGGATCTTGCAATCGGAAGCTTGTGGGAGCACGCCATTTTGCAGCATCAGCTATAACAAGGGGAATATTTAATGCATCTCAGGATTATGCATCGCCATTTGATGGTGATGGACATGGCACGCACACAGCTTCAATTGCTGCTGGAAACCATGGCATTCCAGTCATAGTTGCTGGACATCACTTTGGAAATGCCAGTGGGATGGCTCCTCGTTCACACATTGCTGTTTACAAGGCACTGTACAAAAGTTTTGGAGGTTTTGCTGCTGATGTTGTTGCTGCAGTTGATCAGGCTGCTCAGGATGGAGTGGATATAATAAGTTTATCAATCACACCGAATCGGCGTCCCCCTGGTATTGCAACATTTTTTAATCCCATAGATATGGCACTGCTCTCTGCTGTAAAGGCTGGTATATTCGTTGTGCAAGCAGCTGGCAATACTGGACCAGCACCAAAGAGCATGTCTTCCTTCAGTCCATGGATCTTTACTGTTGGTGCTGCTTCTCACGATAGAAGCTATGCTAACTCTATACACCTTGGCAATAATGTCACCATCCCGGGGGTCGGTCTTGCACCTGGAACCTATAATGACACAAAGTACAAACTAGTTGCTGCAATACATGCACTGAACAATGACACAAACGTGTCAGAGGACATGTATGTGGGCGAATGCCAAGACTCCAGTAACTTTGATCAGGATCTGGTCCAAGGGAACCTTCTAATATGCAGCTACTCAATCAGATTTGTGCTAGGGCTTTCAACGGTTAAACAGGCTTTACAGACGGCGAAAAACTTGAGTGCTGCTGGTGTCATTTTCTATATGGATTCTTTTGTGATAGGTTTTAGGCTCAACCCAATTCCAATGAAAATGCCCGGCATCATAATTTCATCACCAGAAGATTCCAAGATGCTTCTTCAATACTACAATTCTTCTTTGGAAGTAGATGGATTAACAAAGAAAATTTCTAAATTTGGAGCTGTTGCCAGCATATGTGGAGGATTGAAGGCAAATTATAGCTCTTCTGCCCCACAAATTATGTACTACTCTGCTAGAGGACCAGATCCAGAAGACAGTTCTCTTGATGATTCTGATATTATGAAGCCTAACTTGGTAGCTCCTGGAAATTCCATATGGGCTGCTTGGAGCTCTGTTGCCACTGACTCTATTGAATTTCTTGGTGAAAACTTTGCAATGATGTCGGGAACGAGCATGGCTGCTCCTCATATTGCAGGCCTAGCCTCACTCATAAAGCAGAAGTATCCTAGTCTTAGTCCTTCAGCCATTGCATCTGCACTATCGACAACAGCTTCTCTTTACAACAAGACTGGTGGACCGATCATGGCGCAGCGTGCTTATGCTAACCCTGAACAGAACCAGTCTCCAGCTACGCCTTTCGATATGGGAAGTGGTTTTGTGAATGCAACAGCAGCTCTCAACCCAGGGTTGATATTTGATTCTAGTTACGATGATTATATGTCTTTTCTTTGTGGTATCAACGGATCATCTCCTGTGGTATTCAACTACACAGGCCAGAACTGTGGGCTATACAATTCTAGCATTACTGGAGCTGATTTGAACTTGCCCTCTGTGACGATAGCAAAACTTAACCAGTCGAGAGTAGTGCAACGAACCGTGACCAACATTGCTGGACCTGAGTTTTATAGTGTTGGTTGGAGTGCTCCTTATGGGATTTCTTTGAAGGTTTCTCCAACTCGATTTACAATCGGCAGTGGCGAGAAACAAGAGCTAACCATATTCTTCAACTCCACGATGAACAGCTCGGTTGCTAGCTTTGGTAGAATTGGACTTTTTGGGAGTGCAGGCCATATAATCAACATTCCTCTTTCGGTGATTTTGAAGATCTCATATAACAATACTACTAATTGA 2535 43.55 MDIIYCARLLCVVVCFGMFLCASCLDEFGDSTAVYIVTLKEPPSTTHYYGQLRQNTTSFRLNTSGGLSIHKPRNISRKHRRYRSYIARVHDSLLKKVLKGEKYLKLYSYHFLINGFAVLVTEEQASKLSKRIEVANVVMDFSVRTATTHTPQFLGLPQGAWSQDGGFESAGAGIVIGFIDTGIDPSHPSFADDLTDNPFPIPAHFSGICEVTPDFPSGSCNRKLVGARHFAASAITRGIFNASQDYASPFDGDGHGTHTASIAAGNHGIPVIVAGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAVDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAVKAGIFVVQAAGNTGPAPKSMSSFSPWIFTVGAASHDRSYANSIHLGNNVTIPGVGLAPGTYNDTKYKLVAAIHALNNDTNVSEDMYVGECQDSSNFDQDLVQGNLLICSYSIRFVLGLSTVKQALQTAKNLSAAGVIFYMDSFVIGFRLNPIPMKMPGIIISSPEDSKMLLQYYNSSLEVDGLTKKISKFGAVASICGGLKANYSSSAPQIMYYSARGPDPEDSSLDDSDIMKPNLVAPGNSIWAAWSSVATDSIEFLGENFAMMSGTSMAAPHIAGLASLIKQKYPSLSPSAIASALSTTASLYNKTGGPIMAQRAYANPEQNQSPATPFDMGSGFVNATAALNPGLIFDSSYDDYMSFLCGINGSSPVVFNYTGQNCGLYNSSITGADLNLPSVTIAKLNQSRVVQRTVTNIAGPEFYSVGWSAPYGISLKVSPTRFTIGSGEKQELTIFFNSTMNSSVASFGRIGLFGSAGHIINIPLSVILKISYNNTTN 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36435208 36441323 + ClG42_01g0262800.10 Clacu01g2628 242012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2628 844 Gene3D Peptidase S8/S53 domain 173 707 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu01g2628 844 SUPERFAMILY Subtilisin-like 146 698 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu01g2628 844 CDD PA_subtilisin_like 392 527 - -
Clacu01g2628 844 CDD Peptidases_S8_3 146 653 IPR034197 -
Clacu01g2628 844 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 176 187 IPR023827 -
Clacu01g2628 844 PRINTS Subtilisin serine protease family (S8) signature 616 632 IPR015500 -
Clacu01g2628 844 PRINTS Subtilisin serine protease family (S8) signature 251 264 IPR015500 -
Clacu01g2628 844 PRINTS Subtilisin serine protease family (S8) signature 171 190 IPR015500 -
Clacu01g2628 844 Gene3D - 386 554 - -
Clacu01g2628 844 Pfam Subtilase family 171 666 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Clacu01g2628 844 FunFam Subtilisin-like protease SBT1.5 173 397 - -
Clacu01g2628 844 Pfam Fibronectin type-III domain 740 833 IPR041469 -
Clacu01g2628 844 Pfam Peptidase inhibitor I9 34 145 IPR010259 -
Clacu01g2628 844 ProSitePatterns Serine proteases, subtilase family, serine active site. 617 627 IPR023828 -
Clacu01g2628 844 Gene3D - 711 835 - -
Clacu01g2628 844 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 23 144 IPR037045 -
Clacu01g2628 844 ProSiteProfiles Serine proteases, subtilase domain profile. 151 694 - -
Clacu01g2628 844 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 94 798 IPR045051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2628 Clacu-Chr1:36435208 Clacu11g1370 Clacu-Chr11:23999067 1.10E-189 dispersed
Clacu01g2628 Clacu-Chr1:36435208 Clacu05g0898 Clacu-Chr5:7857985 3.00E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2628 - - - 0.0