Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2678 ATGGAGAGCCACGGAGCCGGTAGTTATTTCGTGGACGAGAAGGCCGTCCTCGTCGAGAACATTTTCTTCGACTTCCTTAAGAGCTTTCGCCTCAATGGGAACTCTGGAGACCCTTACTACGAGGCAGAGATAGAAGCTATGATGGCTGGCGAATCTAACACCATGTTTATTGATTTCGCTCACCTCATGGGTTCCAATAATCTTCTTCACATTGCAATCGCCGACGAATATCTGAGGTTTGAACCTTACCTGAAGAACGCTTGTAAGCGGTTCGTAATGGAGCAGAATCCTTCTTTCATCGCTGACGATAACCCATTCAAGGACATAAATGTTGCTTTCTTCAACATTCCTGTTTCTAAAAGGTTGAGAGAATTGACTACTGCAGAAATTGGGAAATTAGTATCTGTGACAGGAGTTGTGACGCGAACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGAAATGTCATAAAGAATGTTGAACAACAATTTAAGTACACCGAGCCAACAATATGCATGAACCCGACCTGTTCAAATAGAACAAAGTGGGCATTACTTCGGCAAGAGAGTAAATTCGCTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCAAAGGAGATACCAGCTGGCTCTCTTCCACGATCTCTGGATGTTATTCTCCGCCATGAAATGGTTGAACGAGCTAGGGCTGGAGACACGGTCATCTTCACAGGTACAGTAGTTGTCATACCAGATATATTAGCATTAGCCTCTCCAGGAGAAAGAGCAGAATGTCGTCGAGAAGCTTCAGAGCGAAGGAATGCTGCGGTTGGGCATGAAGGAATGAGGGGGCTACGAGCCCTAGGAGTGAGGGACCTGTCCTATCGCCTAGCCTTTATTGCCAATTCAGTTCAGGTTTTAGATGGCAGAAGGAATTTTGATATCAGAAATAGGAAAAAGGATGCGGATGAAGACAACCAACAATTTACTACTGCAGAGCTTGATGACATTCAAAGAATGAGGAATACACCTGACTTTTTCAATAGACTTGTTGATAGCATTGCACCGGCAGTTTTTGGCCATCAAGATATCAAGCGAGCAATCCTGTTGATGCTGTTAGGTGGTGTCCACAAGTTGACTCATGAAGGCATTAACCTTCGAGGTGACATCAACGTTTGTATAGTAGGAGATCCAAGCTGTGCGAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCTGCTGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGAGAGTTTTGTATTGAGGCTGGTGCCTTGATGCTTGCCGACAATGGCATTTGCTGCATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATTACAAAAGCCGGAATACAGGCAACACTAAATGCTAGGACGTCAATCCTCGCTGCTGCTAATCCTACAGGAGGACGCTATGACAAATCTAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTTGTGTACGTGATGATAGATGACCCAGATGATCAAACAGATTACCATATTGCACATCACATTGTGAGAGTACATCAGAAGCATGAAGATGCTCTCTCTCCTGCATTTACTACTGCAGAGTTGAAGCGTTACATTGCATATGCAAAAACTCTAAAACCAAAGTTAAGTTTAGAAGCCAGAAAGGTATTGGTGGACTCTTATGTCACTCTTCGCAGAGGAGATACAGCTCCTGGAAGTAGGGTTGCCTATCGCATGACAGTTAGGCAGCTCGAGGCATTAATAAGGTTGTCTGAAGCAATTGCTCGTAGTTATTTGGAGACTCTGGTTCAATCGCGTCATGTGCGTTTAGCAGTGACTTTACTGAAAACGTCAATAATCAGTGTGGAATCTAGTGAGATTGACCTATCTGAATTTGAAGAAGAAACTAACGGAGGTGGAGATGGTGATAATAATGTCGGCGATGGGCCTAATGAGGTTGATGCTGAACCTAGGAAAGGTGCAACAGAGCCAACTACTGGAAATATTGGTTCTGCAAGTAAACATAGGAAGGAGAAACTTCTTGTGAGTGATGAATATTTCCAGAGGGTTACTCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAACATGCGATGCAAGAAGGACTTGGGCTAGCGGGAATGAGGCAGAGAGACTTAATTGAGTGGTATGTGGATCAACAGAACGAAAGAAATAGCTATAGCTCCATGGAGGAGGCAGATAAAGAAATCAAATTAGTTAGAGCTATTATCCAGCATTTGATAGTAAACGAAGGCCATTTGATAGTGGTAGATGACGGGAGGCCAGTGGATGGCGAGGTTGAAGGCGAACCACCATTATCATTACCGACAGCCGCTTTAAGGCTGGGGGTTGTAGAGGCTTTGATTGAGGAAGGGAAACCAAATGAAGCGGACGTTGGGAACAATTCCAATGCAATCTCGAATTCTTTTAAGATCTTGCCAGTATTGATATGTGATTTTTGA 2595 44.2 MESHGAGSYFVDEKAVLVENIFFDFLKSFRLNGNSGDPYYEAEIEAMMAGESNTMFIDFAHLMGSNNLLHIAIADEYLRFEPYLKNACKRFVMEQNPSFIADDNPFKDINVAFFNIPVSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVIPDILALASPGERAECRREASERRNAAVGHEGMRGLRALGVRDLSYRLAFIANSVQVLDGRRNFDIRNRKKDADEDNQQFTTAELDDIQRMRNTPDFFNRLVDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVTLRRGDTAPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVQSRHVRLAVTLLKTSIISVESSEIDLSEFEEETNGGGDGDNNVGDGPNEVDAEPRKGATEPTTGNIGSASKHRKEKLLVSDEYFQRVTQALVMRLRQHEEHAMQEGLGLAGMRQRDLIEWYVDQQNERNSYSSMEEADKEIKLVRAIIQHLIVNEGHLIVVDDGRPVDGEVEGEPPLSLPTAALRLGVVEALIEEGKPNEADVGNNSNAISNSFKILPVLICDF 864
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 36883332 36891820 + ClG42_01g0267800.10 Clacu01g2678 242062
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2678 864 Pfam MCM AAA-lid domain 571 656 IPR041562 -
Clacu01g2678 864 SUPERFAMILY Nucleic acid-binding proteins 22 252 IPR012340 -
Clacu01g2678 864 MobiDBLite consensus disorder prediction 667 713 - -
Clacu01g2678 864 SMART mcm 118 657 IPR031327 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2678 864 PRINTS Mini-chromosome maintenance (MCM) protein family signature 387 402 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2678 864 PRINTS Mini-chromosome maintenance (MCM) protein family signature 526 534 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2678 864 PRINTS Mini-chromosome maintenance (MCM) protein family signature 499 511 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2678 864 PRINTS Mini-chromosome maintenance (MCM) protein family signature 447 461 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2678 864 PRINTS Mini-chromosome maintenance (MCM) protein family signature 475 488 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2678 864 Pfam MCM N-terminal domain 21 115 IPR027925 -
Clacu01g2678 864 Gene3D - 10 118 - -
Clacu01g2678 864 FunFam DNA helicase 331 661 - -
Clacu01g2678 864 FunFam DNA helicase 149 200 - -
Clacu01g2678 864 Gene3D - 712 819 - -
Clacu01g2678 864 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 281 302 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Clacu01g2678 864 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 77 89 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Clacu01g2678 864 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 119 131 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Clacu01g2678 864 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 222 233 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Clacu01g2678 864 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 169 186 IPR008049 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro)
Clacu01g2678 864 Pfam MCM P-loop domain 334 556 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2678 864 Gene3D - 122 250 IPR012340 -
Clacu01g2678 864 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 17 765 IPR031327 GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER)
Clacu01g2678 864 Pfam MCM OB domain 122 250 IPR033762 -
Clacu01g2678 864 Gene3D - 327 672 IPR027417 -
Clacu01g2678 864 ProSitePatterns MCM family signature. 455 463 IPR018525 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro)
Clacu01g2678 864 Pfam MCM6 C-terminal winged-helix domain 716 807 IPR041024 -
Clacu01g2678 864 CDD MCM6 349 655 - -
Clacu01g2678 864 Gene3D - 149 200 - -
Clacu01g2678 864 ProSiteProfiles MCM family domain profile. 346 552 IPR001208 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro)
Clacu01g2678 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 657 IPR027417 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2678 Clacu-Chr1:36883332 Clacu02g0508 Clacu-Chr2:4680515 5.40E-99 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2678 K02542 - csv:101219775 1508.81