Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu01g2678 | ATGGAGAGCCACGGAGCCGGTAGTTATTTCGTGGACGAGAAGGCCGTCCTCGTCGAGAACATTTTCTTCGACTTCCTTAAGAGCTTTCGCCTCAATGGGAACTCTGGAGACCCTTACTACGAGGCAGAGATAGAAGCTATGATGGCTGGCGAATCTAACACCATGTTTATTGATTTCGCTCACCTCATGGGTTCCAATAATCTTCTTCACATTGCAATCGCCGACGAATATCTGAGGTTTGAACCTTACCTGAAGAACGCTTGTAAGCGGTTCGTAATGGAGCAGAATCCTTCTTTCATCGCTGACGATAACCCATTCAAGGACATAAATGTTGCTTTCTTCAACATTCCTGTTTCTAAAAGGTTGAGAGAATTGACTACTGCAGAAATTGGGAAATTAGTATCTGTGACAGGAGTTGTGACGCGAACAAGCGAGGTCCGACCAGAGCTTCTACAGGGGACCTTCAAGTGCTTAGAATGTGGAAATGTCATAAAGAATGTTGAACAACAATTTAAGTACACCGAGCCAACAATATGCATGAACCCGACCTGTTCAAATAGAACAAAGTGGGCATTACTTCGGCAAGAGAGTAAATTCGCTGATTGGCAGAGGGTGCGAATGCAAGAGACTTCAAAGGAGATACCAGCTGGCTCTCTTCCACGATCTCTGGATGTTATTCTCCGCCATGAAATGGTTGAACGAGCTAGGGCTGGAGACACGGTCATCTTCACAGGTACAGTAGTTGTCATACCAGATATATTAGCATTAGCCTCTCCAGGAGAAAGAGCAGAATGTCGTCGAGAAGCTTCAGAGCGAAGGAATGCTGCGGTTGGGCATGAAGGAATGAGGGGGCTACGAGCCCTAGGAGTGAGGGACCTGTCCTATCGCCTAGCCTTTATTGCCAATTCAGTTCAGGTTTTAGATGGCAGAAGGAATTTTGATATCAGAAATAGGAAAAAGGATGCGGATGAAGACAACCAACAATTTACTACTGCAGAGCTTGATGACATTCAAAGAATGAGGAATACACCTGACTTTTTCAATAGACTTGTTGATAGCATTGCACCGGCAGTTTTTGGCCATCAAGATATCAAGCGAGCAATCCTGTTGATGCTGTTAGGTGGTGTCCACAAGTTGACTCATGAAGGCATTAACCTTCGAGGTGACATCAACGTTTGTATAGTAGGAGATCCAAGCTGTGCGAAATCTCAGTTTCTTAAGTATACTTCAGGTATTGTGCCAAGATCAGTTTACACATCTGGAAAGTCCTCTTCTGCTGCTGGATTGACTGCAACTGTAGCCAAAGAACCAGAAACTGGAGAGTTTTGTATTGAGGCTGGTGCCTTGATGCTTGCCGACAATGGCATTTGCTGCATTGATGAATTTGACAAAATGGACATCAGGGATCAGGTTGCAATTCATGAAGCTATGGAGCAGCAGACCATAAGCATTACAAAAGCCGGAATACAGGCAACACTAAATGCTAGGACGTCAATCCTCGCTGCTGCTAATCCTACAGGAGGACGCTATGACAAATCTAAACCACTCAAGTATAATGTTGCTCTGCCTCCTGCTATTCTCTCAAGGTTTGACCTTGTGTACGTGATGATAGATGACCCAGATGATCAAACAGATTACCATATTGCACATCACATTGTGAGAGTACATCAGAAGCATGAAGATGCTCTCTCTCCTGCATTTACTACTGCAGAGTTGAAGCGTTACATTGCATATGCAAAAACTCTAAAACCAAAGTTAAGTTTAGAAGCCAGAAAGGTATTGGTGGACTCTTATGTCACTCTTCGCAGAGGAGATACAGCTCCTGGAAGTAGGGTTGCCTATCGCATGACAGTTAGGCAGCTCGAGGCATTAATAAGGTTGTCTGAAGCAATTGCTCGTAGTTATTTGGAGACTCTGGTTCAATCGCGTCATGTGCGTTTAGCAGTGACTTTACTGAAAACGTCAATAATCAGTGTGGAATCTAGTGAGATTGACCTATCTGAATTTGAAGAAGAAACTAACGGAGGTGGAGATGGTGATAATAATGTCGGCGATGGGCCTAATGAGGTTGATGCTGAACCTAGGAAAGGTGCAACAGAGCCAACTACTGGAAATATTGGTTCTGCAAGTAAACATAGGAAGGAGAAACTTCTTGTGAGTGATGAATATTTCCAGAGGGTTACTCAAGCCCTTGTCATGCGCCTCAGACAGCACGAAGAACATGCGATGCAAGAAGGACTTGGGCTAGCGGGAATGAGGCAGAGAGACTTAATTGAGTGGTATGTGGATCAACAGAACGAAAGAAATAGCTATAGCTCCATGGAGGAGGCAGATAAAGAAATCAAATTAGTTAGAGCTATTATCCAGCATTTGATAGTAAACGAAGGCCATTTGATAGTGGTAGATGACGGGAGGCCAGTGGATGGCGAGGTTGAAGGCGAACCACCATTATCATTACCGACAGCCGCTTTAAGGCTGGGGGTTGTAGAGGCTTTGATTGAGGAAGGGAAACCAAATGAAGCGGACGTTGGGAACAATTCCAATGCAATCTCGAATTCTTTTAAGATCTTGCCAGTATTGATATGTGATTTTTGA | 2595 | 44.2 | MESHGAGSYFVDEKAVLVENIFFDFLKSFRLNGNSGDPYYEAEIEAMMAGESNTMFIDFAHLMGSNNLLHIAIADEYLRFEPYLKNACKRFVMEQNPSFIADDNPFKDINVAFFNIPVSKRLRELTTAEIGKLVSVTGVVTRTSEVRPELLQGTFKCLECGNVIKNVEQQFKYTEPTICMNPTCSNRTKWALLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEMVERARAGDTVIFTGTVVVIPDILALASPGERAECRREASERRNAAVGHEGMRGLRALGVRDLSYRLAFIANSVQVLDGRRNFDIRNRKKDADEDNQQFTTAELDDIQRMRNTPDFFNRLVDSIAPAVFGHQDIKRAILLMLLGGVHKLTHEGINLRGDINVCIVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPTGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKHEDALSPAFTTAELKRYIAYAKTLKPKLSLEARKVLVDSYVTLRRGDTAPGSRVAYRMTVRQLEALIRLSEAIARSYLETLVQSRHVRLAVTLLKTSIISVESSEIDLSEFEEETNGGGDGDNNVGDGPNEVDAEPRKGATEPTTGNIGSASKHRKEKLLVSDEYFQRVTQALVMRLRQHEEHAMQEGLGLAGMRQRDLIEWYVDQQNERNSYSSMEEADKEIKLVRAIIQHLIVNEGHLIVVDDGRPVDGEVEGEPPLSLPTAALRLGVVEALIEEGKPNEADVGNNSNAISNSFKILPVLICDF | 864 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 36883332 | 36891820 | + | ClG42_01g0267800.10 | Clacu01g2678 | 242062 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu01g2678 | 864 | Pfam | MCM AAA-lid domain | 571 | 656 | IPR041562 | - | |
| Clacu01g2678 | 864 | SUPERFAMILY | Nucleic acid-binding proteins | 22 | 252 | IPR012340 | - | |
| Clacu01g2678 | 864 | MobiDBLite | consensus disorder prediction | 667 | 713 | - | - | |
| Clacu01g2678 | 864 | SMART | mcm | 118 | 657 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2678 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 387 | 402 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2678 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 526 | 534 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2678 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 499 | 511 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2678 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 447 | 461 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2678 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 475 | 488 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2678 | 864 | Pfam | MCM N-terminal domain | 21 | 115 | IPR027925 | - | |
| Clacu01g2678 | 864 | Gene3D | - | 10 | 118 | - | - | |
| Clacu01g2678 | 864 | FunFam | DNA helicase | 331 | 661 | - | - | |
| Clacu01g2678 | 864 | FunFam | DNA helicase | 149 | 200 | - | - | |
| Clacu01g2678 | 864 | Gene3D | - | 712 | 819 | - | - | |
| Clacu01g2678 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 281 | 302 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Clacu01g2678 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 77 | 89 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Clacu01g2678 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 119 | 131 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Clacu01g2678 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 222 | 233 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Clacu01g2678 | 864 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 169 | 186 | IPR008049 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Clacu01g2678 | 864 | Pfam | MCM P-loop domain | 334 | 556 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2678 | 864 | Gene3D | - | 122 | 250 | IPR012340 | - | |
| Clacu01g2678 | 864 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 17 | 765 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:1902969(PANTHER)|GO:1990518(PANTHER) | |
| Clacu01g2678 | 864 | Pfam | MCM OB domain | 122 | 250 | IPR033762 | - | |
| Clacu01g2678 | 864 | Gene3D | - | 327 | 672 | IPR027417 | - | |
| Clacu01g2678 | 864 | ProSitePatterns | MCM family signature. | 455 | 463 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Clacu01g2678 | 864 | Pfam | MCM6 C-terminal winged-helix domain | 716 | 807 | IPR041024 | - | |
| Clacu01g2678 | 864 | CDD | MCM6 | 349 | 655 | - | - | |
| Clacu01g2678 | 864 | Gene3D | - | 149 | 200 | - | - | |
| Clacu01g2678 | 864 | ProSiteProfiles | MCM family domain profile. | 346 | 552 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Clacu01g2678 | 864 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 356 | 657 | IPR027417 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu01g2678 | K02542 | - | - | csv:101219775 | 1508.81 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g2678 | Clacu-Chr1:36883332 | Clacu02g0508 | Clacu-Chr2:4680515 | 5.40E-99 | dispersed |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Clacu08g0027 | . | 106 | 784 | Core DNA Replication Machinery Family | AT4G14700 | 67.0 | 1.2e-265 | 912.9 | |
| Clacu08g0027 | . | 106 | 784 | Core DNA Replication Machinery Family | AT4G12620 | 69.3 | 6.3e-275 | 943.7 | |
| Clacu08g1734 | . | 55 | 408 | Core DNA Replication Machinery Family | AT2G37560 | 65.0 | 3.4e-137 | 485.0 | |
| Clacu07g0481 | . | 9 | 410 | Core DNA Replication Machinery Family | AT2G01120 | 64.8 | 3.5e-152 | 535.0 | |
| Clacu06g0361 | . | 3 | 531 | Core DNA Replication Machinery Family | AT4G29910 | 58.0 | 9.1e-172 | 600.5 | |
| Clacu11g0941 | . | 1 | 283 | Core DNA Replication Machinery Family | AT1G26840 | 65.7 | 1.9e-93 | 339.3 | |
| Clacu09g2284 | . | 68 | 861 | Core DNA Replication Machinery Family | AT1G79150 | 59.4 | 4.8e-246 | 847.8 | |
| Clacu10g1298 | . | 8 | 940 | Core DNA Replication Machinery Family | AT1G44900 | 75.6 | 0.0e+00 | 1354.0 | |
| Clacu01g2525 | . | 120 | 694 | Core DNA Replication Machinery Family | AT5G46280 | 80.9 | 1.4e-268 | 922.2 | |
| Clacu02g0508 | . | 1 | 845 | Core DNA Replication Machinery Family | AT2G16440 | 76.2 | 0.0e+00 | 1153.7 | |
| Clacu11g0494 | . | 1 | 735 | Core DNA Replication Machinery Family | AT2G07690 | 78.4 | 0.0e+00 | 1112.4 | |
| Clacu01g2678 | . | 7 | 801 | Core DNA Replication Machinery Family | AT5G44635 | 73.3 | 0.0e+00 | 1152.9 | |
| Clacu09g0515 | . | 4 | 722 | Core DNA Replication Machinery Family | AT4G02060 | 85.3 | 0.0e+00 | 1219.9 | |
| Clacu02g2016 | . | 55 | 521 | Core DNA Replication Machinery Family | AT2G29680 | 61.9 | 5.3e-163 | 571.2 | |
| Clacu02g2016 | . | 37 | 482 | Core DNA Replication Machinery Family | AT1G07270 | 58.8 | 2.5e-143 | 505.8 | |
| Clacu09g0874 | . | 1 | 593 | Core DNA Replication Machinery Family | AT3G25100 | 76.2 | 1.1e-257 | 885.9 | |
| Clacu10g2027 | . | 12 | 783 | Core DNA Replication Machinery Family | AT3G09660 | 72.6 | 0.0e+00 | 1081.2 | |
| Clacu09g1643 | . | 9 | 629 | Core DNA Replication Machinery Family | AT2G14050 | 78.9 | 2.4e-285 | 978.0 | |
| Clacu02g1224 | . | 1908 | 2318 | Core DNA Replication Machinery Family | AT2G20980 | 56.4 | 1.1e-118 | 423.7 | |
| Clacu09g0268 | . | 1 | 192 | Core DNA Replication Machinery Family | AT1G80190 | 67.5 | 1.0e-72 | 270.0 | |
| Clacu11g0765 | . | 635 | 793 | Core DNA Replication Machinery Family | AT1G19080 | 69.8 | 2.1e-61 | 232.3 | |
| Clacu11g0765 | . | 635 | 793 | Core DNA Replication Machinery Family | AT3G55490 | 69.8 | 2.1e-61 | 232.3 | |
| Clacu05g0167 | . | 15 | 164 | Core DNA Replication Machinery Family | AT5G49010 | 65.3 | 1.5e-49 | 193.0 | |
| Clacu02g1274 | . | 1 | 1538 | Core DNA Replication Machinery Family | AT5G67100 | 60.4 | 0.0e+00 | 1750.3 | |
| Clacu04g1224 | . | 151 | 773 | Core DNA Replication Machinery Family | AT1G67630 | 60.7 | 4.3e-215 | 744.6 | |
| Clacu06g0210 | . | 1 | 446 | Core DNA Replication Machinery Family | AT1G67320 | 64.5 | 5.8e-183 | 637.5 | |
| Clacu08g0161 | . | 48 | 491 | Core DNA Replication Machinery Family | AT5G41880 | 65.0 | 1.3e-176 | 616.3 | |
| Clacu01g1579 | . | 1 | 1086 | Core DNA Replication Machinery Family | AT5G63960 | 80.7 | 0.0e+00 | 1797.3 | |
| Clacu10g1736 | . | 1 | 419 | Core DNA Replication Machinery Family | AT2G42120 | 75.9 | 3.2e-196 | 681.4 | |
| Clacu06g0210 | . | 1 | 446 | Core DNA Replication Machinery Family | AT1G67320 | 64.5 | 5.8e-183 | 637.5 | |
| Clacu01g0553 | . | 1 | 127 | Core DNA Replication Machinery Family | AT1G09815 | 60.8 | 3.2e-37 | 151.4 | |
| Clacu02g2254 | . | 1 | 2095 | Core DNA Replication Machinery Family | AT1G08260 | 71.5 | 0.0e+00 | 2981.8 | |
| Clacu09g2081 | . | 7 | 2057 | Core DNA Replication Machinery Family | AT1G08260 | 68.7 | 0.0e+00 | 2819.3 | |
| Clacu02g2254 | . | 25 | 2202 | Core DNA Replication Machinery Family | AT2G27120 | 68.1 | 0.0e+00 | 2948.3 | |
| Clacu09g2081 | . | 29 | 2148 | Core DNA Replication Machinery Family | AT2G27120 | 65.8 | 0.0e+00 | 2773.0 | |
| Clacu04g1335 | . | 638 | 1059 | Core DNA Replication Machinery Family | AT5G22110 | 67.0 | 8.2e-169 | 590.5 | |
| Clacu02g2304 | . | 50 | 974 | Core DNA Replication Machinery Family | AT5G22010 | 63.0 | 1.1e-304 | 1042.7 | |
| Clacu10g0345 | . | 1 | 331 | Core DNA Replication Machinery Family | AT1G63160 | 91.0 | 3.7e-173 | 604.4 | |
| Clacu04g0492 | . | 1 | 354 | Core DNA Replication Machinery Family | AT5G27740 | 85.3 | 1.1e-178 | 622.9 | |
| Clacu11g1775 | . | 66 | 384 | Core DNA Replication Machinery Family | AT1G21690 | 81.6 | 2.1e-144 | 508.8 | |
| Clacu08g0732 | . | 1 | 363 | Core DNA Replication Machinery Family | AT1G77470 | 75.5 | 2.5e-154 | 542.0 | |
| Clacu11g0299 | . | 26 | 607 | Core DNA Replication Machinery Family | AT2G06510 | 67.9 | 6.7e-245 | 843.6 | |
| Clacu10g0107 | . | 32 | 703 | Core DNA Replication Machinery Family | AT2G06510 | 50.4 | 9.8e-196 | 680.2 | |
| Clacu06g1663 | . | 1 | 623 | Core DNA Replication Machinery Family | AT5G08020 | 68.3 | 9.8e-249 | 856.3 | |
| Clacu10g0107 | . | 10 | 811 | Core DNA Replication Machinery Family | AT5G45400 | 50.2 | 8.7e-227 | 783.9 | |
| Clacu06g1663 | . | 1 | 618 | Core DNA Replication Machinery Family | AT5G61000 | 66.1 | 7.8e-241 | 830.1 | |
| Clacu10g0107 | . | 5 | 797 | Core DNA Replication Machinery Family | AT4G19130 | 53.7 | 2.2e-224 | 775.8 | |
| Clacu03g1825 | . | 1 | 404 | Core DNA Replication Machinery Family | AT5G26680 | 82.5 | 1.0e-188 | 656.4 | |
| Clacu05g0312 | . | 1 | 1110 | Core DNA Replication Machinery Family | AT1G08840 | 52.3 | 8.9e-298 | 1020.0 | |
| Clacu07g1578 | . | 1 | 297 | Core DNA Replication Machinery Family | AT2G25100 | 67.0 | 1.3e-115 | 412.9 | |
| Clacu02g2212 | . | 2 | 740 | Core DNA Replication Machinery Family | AT1G08130 | 69.4 | 8.2e-288 | 986.5 | |
| Clacu02g2212 | . | 162 | 740 | Core DNA Replication Machinery Family | AT1G49250 | 69.3 | 2.8e-233 | 805.1 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0007427 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 6 | 1 | 2 | 1 | 1 | 0 | 1 | 0 | 33 |