Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g2679 ATGGTTGCAGCAGCTTCAGCTTGGCACATGAAGTTCTTCACACTTACACTTGTGCTGCTCCTCCTTCCTTGTGTATGTGTATGTGTGCACTCCCACTCACTGTCCCTCAAGGCACAAGCTTCTGTTCTGCTTTCCATCAAACACAGTTTCGATGAAGCCACTCCAATTTCGACTCTCCTGGACTGGAATGCTTCAAATTACTCAGACCTCTGCAGTTGGACTGGAATTCAATGCGATGCCATTGGCATGAAGAGATCAGTAGTGTCGCTCGACATTTCCAATTCCAACATATCCGGGACCTTCCCCCCTCTAATTCACAAGCTAACCAAGCTTCGCTTTCTCAACATTTCCAACAATCAGTTCAGGGGGCAACTCCAGTGGGAGTATTCTCAGTTGAAACTGCTGCAGGTATTTGATGCTTATAACAACAATTTCAATGGTTCCCTCCCCACAGGCGTCCTTCAACTTCCCAGTCTAAAGCACTTAAATCTTGGCGGGAATTACTTCACCGGTCGAATCCCTCCAAGCTATGGTGATATGGGGGAGCTCATTTATCTGTCCCTTGCCGGCAATGACTTGGGCGGTCCCATTCCCCCTGAGCTCGGTAATCTTACCAATCTCCACCGCCTTTATTTGGGATACTTCAACCAGTTTGAGGGTGGGATACCGTCTCAACTCGAACAACTAGTGAATTTGAATCATCTCGACCTTGCGAGTTGTGGTTTACAAGGTCCAATCCCACCCGGGTTGGGGAATCTCAACAAGTTGGACACTCTGTTCTTGCAGACAAATCAGCTGAGCGGTTCAATTCCAACCCAGTTGGGCAACTTGAGCGCCTTGATTTCCCTTGACCTCTCCAACAACCAGTTAACGGGAGAGATCCCCCTTGAATTTGCAAACCTCCGCCAGCTTTCGCTGCTCAATTTATTCATGAACAAGTTGCATGGGGAGATTCCTAATGTTGTAGCCCATCTTCCGGGGTTGGAGGTTTTGAAGCTGTGGCAAAACAACTTCACAGGAGGCATTCCGTCAAAGCTGGGTGAGAATGGGAGGCTGAGGGAGGTGGACTTGTCCAGCAACAAGCTCACTGGGATGGTCCCGGAGCGTTTGTGCTTAGGAGGAAGGCTGAAGATCTTGATTTTACTCAACAATTTTTTGTTTGGGGGTGTGCCAGGTGATCTAGGGCGATGCCAGACGCTTGTAAGAGTTCGGATGGGTCAGAATTATTTGACGGGAACAATCCCAGATGGGCTGCTTTACTTGCCACAACTCTCCCTCATGGAATTGCAGAACAACTACCTGAGCGGACCCCTTCCACAACCACAACACATCCGCCAACTCCCCTCCAAACTAGGCCGCCTAAACCTTTCCAACAATCGCTTTTCTGGATCCCTCCCCATCTCCATCAGCAACTTTACAAACCTCCAGATTCTGCTTTTGAGTGGAAACCGTTTCTCTGGCCACATTCCTCCCCAAATTGGCAAACTGCGAAATCTTCTCAAGCTAGACATGAGCAGAAACAACTTTTCCGGTTCAATCCCTCCTGAGTTCAGCAATTGTGTCTCCCTCACTTACCTGGATTTGAGCCTCAATCACCTAACTTCTTCAATCCCAGTTCAAATCTCACAAATTCGCATCTTAAATTATCTTAACTTGTCTTGGAACCATCTCACCCACACCCTTCCCATCGAAATTGGCTCCATAAAAAGCTTGACCTCTGCCGACTTCTCCCACAACAACTTTTCCGGTCCCATACCCCAAACTGGCCAGTTTCTACTCTTCAATTCCACATCCTTTGTGGGCAACCCTCAATTGTGTGGATTCTCCTTGAATCCCTGCAAGTCTCAAACCCCAACCACCGCCAATTCGAACAAAGGTGTTGGGAAATATAAGCTGGTGTTCGCGTTGGGGCTATTGATGTGTTCAGTAATATTTGCAGCTCTGGCAATTGTTCAGACAAGGAAAGCGAAAAAGAAATCAAGTTCGTGGAAGCTAGCAGCATTCCAGAAGCTGGAATTTGGAAGTAAGGATATCACAGAGTGCATAAAAGAGAACAACATAATTGGAAAAGGAGGAGCTGGTATTGTGTACAAAGGAATCATGCCAAACGGGGAACAAGTAGCCATAAAAAAGCTGTTGGCCATAACCAAGGGCTCCTCCCACGACAACGGCCTGTCCGCCGAGATACGAACGCTGGGCAAAATCCGGCATAGGAACATCGTGAGATTGCTTGCATTTTGCTCCAATAAGCAGACGAATCTGCTGGTATACGAGTACATGCCCAATGGAAGTTTAGGAGAAGTTCTCCACGGGAAGAGGGGGGGTTCTCTAAAATGGGGAACCAGGCTGAAGATAGCCATAGAAGCCGCCAAAGGGCTTTGCTATTTGCACCATGACTGCTCCCCGCTCATAATTCATAGGGACGTCAAGTCCAACAACATTTTGCTCAACTCAGACTTCGAGGCTCATGTAGCGGACTTCGGTTTGGCCAAGTTCTTGCAAGACAATGGAACATCAGAGTGCATGTCTGCAATAGCCGGCTCTTATGGGTACATTGCTCCAGAATATGCATACACATTAAAAGTGGACGAAAAAACTGATGTTTACAGTTTTGGAGTGGTGCTGCTGGAGTTGATAACGGGGCGGAAGCCAGTTGGAAATTTTGGAGAAGATGGTTTGGACATTGTCCAGTGGGCTAGGATTCAAACCAACTCCACCAAAGAAGGTGTTGTTAAGTTTTATGTGAAAGTAATGGTGATTGTCAGGGCAATTGACATAGAGCTTTCTTCCACTATCTAG 2799 47.34 MVAAASAWHMKFFTLTLVLLLLPCVCVCVHSHSLSLKAQASVLLSIKHSFDEATPISTLLDWNASNYSDLCSWTGIQCDAIGMKRSVVSLDISNSNISGTFPPLIHKLTKLRFLNISNNQFRGQLQWEYSQLKLLQVFDAYNNNFNGSLPTGVLQLPSLKHLNLGGNYFTGRIPPSYGDMGELIYLSLAGNDLGGPIPPELGNLTNLHRLYLGYFNQFEGGIPSQLEQLVNLNHLDLASCGLQGPIPPGLGNLNKLDTLFLQTNQLSGSIPTQLGNLSALISLDLSNNQLTGEIPLEFANLRQLSLLNLFMNKLHGEIPNVVAHLPGLEVLKLWQNNFTGGIPSKLGENGRLREVDLSSNKLTGMVPERLCLGGRLKILILLNNFLFGGVPGDLGRCQTLVRVRMGQNYLTGTIPDGLLYLPQLSLMELQNNYLSGPLPQPQHIRQLPSKLGRLNLSNNRFSGSLPISISNFTNLQILLLSGNRFSGHIPPQIGKLRNLLKLDMSRNNFSGSIPPEFSNCVSLTYLDLSLNHLTSSIPVQISQIRILNYLNLSWNHLTHTLPIEIGSIKSLTSADFSHNNFSGPIPQTGQFLLFNSTSFVGNPQLCGFSLNPCKSQTPTTANSNKGVGKYKLVFALGLLMCSVIFAALAIVQTRKAKKKSSSWKLAAFQKLEFGSKDITECIKENNIIGKGGAGIVYKGIMPNGEQVAIKKLLAITKGSSHDNGLSAEIRTLGKIRHRNIVRLLAFCSNKQTNLLVYEYMPNGSLGEVLHGKRGGSLKWGTRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFLQDNGTSECMSAIAGSYGYIAPEYAYTLKVDEKTDVYSFGVVLLELITGRKPVGNFGEDGLDIVQWARIQTNSTKEGVVKFYVKVMVIVRAIDIELSSTI 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 36892367 36896461 - ClG42_01g0267900.10 Clacu01g2679 242063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g2679 932 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 760 930 - -
Clacu01g2679 932 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 651 759 - -
Clacu01g2679 932 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 20 903 IPR050647 -
Clacu01g2679 932 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g2679 932 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 217 322 - -
Clacu01g2679 932 FunFam Leucine-rich repeat receptor-like protein kinase 36 199 - -
Clacu01g2679 932 Pfam Protein kinase domain 684 887 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2679 932 Pfam Leucine rich repeat N-terminal domain 38 79 IPR013210 -
Clacu01g2679 932 SMART LRR_typ_2 229 253 IPR003591 -
Clacu01g2679 932 SMART LRR_typ_2 472 495 IPR003591 -
Clacu01g2679 932 SMART LRR_typ_2 325 349 IPR003591 -
Clacu01g2679 932 SMART LRR_typ_2 496 519 IPR003591 -
Clacu01g2679 932 SMART LRR_typ_2 180 204 IPR003591 -
Clacu01g2679 932 SMART LRR_typ_2 520 544 IPR003591 -
Clacu01g2679 932 SMART LRR_typ_2 277 300 IPR003591 -
Clacu01g2679 932 SMART LRR_typ_2 156 179 IPR003591 -
Clacu01g2679 932 SUPERFAMILY Protein kinase-like (PK-like) 676 890 IPR011009 -
Clacu01g2679 932 Gene3D Ribonuclease Inhibitor 37 321 IPR032675 -
Clacu01g2679 932 ProSiteProfiles Protein kinase domain profile. 682 932 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2679 932 Gene3D Transferase(Phosphotransferase) domain 1 760 921 - -
Clacu01g2679 932 SMART serkin_6 682 932 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g2679 932 Gene3D Ribonuclease Inhibitor 322 621 IPR032675 -
Clacu01g2679 932 SUPERFAMILY L domain-like 71 367 - -
Clacu01g2679 932 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 329 617 - -
Clacu01g2679 932 Gene3D Phosphorylase Kinase; domain 1 646 759 - -
Clacu01g2679 932 Pfam Leucine Rich Repeat 158 178 IPR001611 GO:0005515(InterPro)
Clacu01g2679 932 Pfam Leucine Rich Repeat 498 520 IPR001611 GO:0005515(InterPro)
Clacu01g2679 932 Pfam Leucine Rich Repeat 547 567 IPR001611 GO:0005515(InterPro)
Clacu01g2679 932 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Clacu01g2679 932 Pfam Leucine Rich Repeat 351 371 IPR001611 GO:0005515(InterPro)
Clacu01g2679 932 Pfam Leucine Rich Repeat 474 496 IPR001611 GO:0005515(InterPro)
Clacu01g2679 932 Pfam Leucine Rich Repeat 87 108 IPR001611 GO:0005515(InterPro)
Clacu01g2679 932 Pfam Leucine Rich Repeat 522 542 IPR001611 GO:0005515(InterPro)
Clacu01g2679 932 Pfam Leucine Rich Repeat 231 253 IPR001611 GO:0005515(InterPro)
Clacu01g2679 932 Pfam Leucine Rich Repeat 183 204 IPR001611 GO:0005515(InterPro)
Clacu01g2679 932 Pfam Leucine Rich Repeat 280 301 IPR001611 GO:0005515(InterPro)
Clacu01g2679 932 SUPERFAMILY L domain-like 294 626 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2679 Clacu-Chr1:36892367 Clacu10g0808 Clacu-Chr10:13816678 4.00E-132 dispersed
Clacu01g2679 Clacu-Chr1:36892367 Clacu01g1868 Clacu-Chr1:30804642 2.00E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73303 PF00069 Pkinase 2.60E-44 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g2679 - - - 0.0