Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0002 ATGGCGATGTTTTCCGTGAAAGCGCGGCTATTTCTAGCTTTCTTCTTTGTTATTGGAATTCATAACATCTTCTCCTACACAGATCCGAACGATGTTGAAATCCTGTTATCGTTGAAAGAGGTATGGAAAAATACGCCACCGACATGGAGGACATCAAGCGATCCATGTGGAGATCTTTGGGAAGGAGTCAGTTGCAACGATTCTAGAGTCACTGAATTAAAATTACCCTATATGGGCCTTGAAGGCCATCTTAGTGGTGACATTGGAGGCCTTACTGAACTAATAACATTGGACCTGTCATTTAATAGATATCTCACTGGTCCACTCTCTCCTAGGTTGGGGGATTTGCGAAATTTGAAGACCTTAATTCTAGCTGCATGTGGCTTCAGTGGTAATATTCCCCAAGAGTTGGGAAACCTTACTCAGTTGATGTCCTTGGCTTTGAATTCAAACCAACTCATTGGTTCTATACCACGTAGTCTTGGAAAGCTCTCCAAACTGGTTTTGCTAGACTTGATGGAGAATCAGTTGAATGGATCTCTCCCTGTCTCAACTTTTGATTCACCAGGTCTGGACCTTCTTCTCCAAGCAAAGCACTTTCACTTGAGCAAGAACAGGCTGTCAGGCTCTATACCCCCTAAGCTCTTTAGCGCTGATATGAAATTAATACACATAGTATTTGACCAGAATCAGTTTTCTGGGAGTATTCCACAAACCTTGGGACTTGTTAACACCCTTGAACTTCTCCGACTTGATAGGAATTCTCTAACAGGAATTGTCCCATCAGATCTTACCAACTTAAAACAAATCCTTCAGTTGAATTTAGCACACAATAATCTGACAGGGCCGTTGCCAAATTTAACTCAAATGACTTCACTATGTGTTGTGGACCTTAGTTACAACTCATTTGATGCATCAACAGCCCCAGATTGGTTCTCAAGCTTACCATCTCTCACCAGTTTGATCGTTGAATATGGGGAACTGGAAGGACCTGTCCCAGAAACAATCTTTAGCTTACCACAGATACAACAAATGCTTGAAGGAAATCCTGCGTGCAACAATAATGTTGATCCCCTCGTGAAACAAAATCATTATTGCCTACCTAATTCACAACCAGCTGATCTAAAGCCTAATTTTGGGAGTCCAGTACTCAACTGTGAAACTAGATTGTGCTCTAATGGCGAGAAGAATAACCCTCAAAACTGTGAATGTCAATATCCCTTTGTAGGGTCTTTCTACTTCAGAGGGCCCTCCATCAGAGACTTGTCTAATGACACCTTGTTTCAGTTACTGAAATACAGCCTCTCCAACAAACTAAATCTTTCTATTGCTTCAGTTGTTATTCAAAAGCCTGTGTTTGAAAGTGATGATTACCTTCACATTCAACTTCAACTTTTTCCACCCTTTGGAAAATATTTCAATCGTTCAGAAATTTTGAGGATTGCGTCTGCGTTGAGTTATCAAACTTTCCTTCTTTCCCCTGATTTAGGATCATTTTATTTCATTCCACTTGATCAGTACAATTTTTTAGCTCCAGATGTTGGAAATTTTAGTAGCATTAGCAACAGGTGGCTTATTGGGATTGCAATTGGTTGTGGCTTACTGCTCCTAACCCTATTTGGAGTTGGAGTATATGCAATTAAGCAGAAGAAAAGAGTATCAAAAGCGATTTCATTGAGCAAGCCATTTGCTTCCTGGTCATCTATTGAACAAATAACTGGAGAAGCACCACAATTAAAGGGAGCCATATATTTTTCTTACGATGAGCTTAGGAAGTTGACAAATAATTTCTCCATAAGTAATGAGATTGGAGCTGGAGGATATGGGAAGGTCTATAGAGGAATTACTGGGTATGGACAAGTTTTCGCAATCAAAAGAGCTAGGCAAGGCTCGAAACAGGGTGCACATGAGTTTAAGACTGAGATTGAATTGCTTTCACGAGTTCATCATAAGAATCTCGTTGGCCTTGTAGGATTTTGTTGTGAACAGGGAGAACAGATGCTTGTTTATGAATTCATGCCTTATGGATCGCTTCGTGACATCCTTGGCATCATCTTCAGAGCTAGATGTGCCATCATAATCCTGATTGGATTCAACACACTCATCATGATCACTTTGTTTCTTCAGCTTAGAGGAAACCTTCTTCTTTTCACCGGGAACAAGCCTTATCTCAATTTTTCTTTTCTTAAGGGATTTCAGAACAGTAGTTGCTTTCTTACTCTTACTCAAAGCCGCAATGGGCACATGATCTTCAGAAGCTTCTCCTTCAACTTGTTTGTCTTGGGAATTATAAGGAGTTGTGTCCATCTTGATTGGAAGAGAAGACTTGAGATAGCACTTGACTCTGCAAGAGGACTAGCTTACCTTCACGAGTTTGCAAATCCTCCAATAATCCATAGAGATATTAAGTCCTCCAATATTCTTTTAGATGAATATTTTAATGCGAAGGTTGCAGATTTTGGCCTGTCCAAGCTTGTATTTGACCATGAAAAGGGACATATTTCTACTGGAGTTAAAGGCACGTGGATGAAGACTTACAAAGATAGGGTCACAAGGAAGGCAAAGGCCAAAGCTTGCATATATGCAGCAGTGGCTCCTGTTGTATTTAACAGAATCATGGCCTTGAAGTTAACAAAGGAGATCTGTGAATTCCTCAAAGGGTATGGTGAATATCTAGAAGTGACGGGGAAGGACATGGTGTCAATAGAGAGTCGTGCATGA 2721 40.46 MAMFSVKARLFLAFFFVIGIHNIFSYTDPNDVEILLSLKEVWKNTPPTWRTSSDPCGDLWEGVSCNDSRVTELKLPYMGLEGHLSGDIGGLTELITLDLSFNRYLTGPLSPRLGDLRNLKTLILAACGFSGNIPQELGNLTQLMSLALNSNQLIGSIPRSLGKLSKLVLLDLMENQLNGSLPVSTFDSPGLDLLLQAKHFHLSKNRLSGSIPPKLFSADMKLIHIVFDQNQFSGSIPQTLGLVNTLELLRLDRNSLTGIVPSDLTNLKQILQLNLAHNNLTGPLPNLTQMTSLCVVDLSYNSFDASTAPDWFSSLPSLTSLIVEYGELEGPVPETIFSLPQIQQMLEGNPACNNNVDPLVKQNHYCLPNSQPADLKPNFGSPVLNCETRLCSNGEKNNPQNCECQYPFVGSFYFRGPSIRDLSNDTLFQLLKYSLSNKLNLSIASVVIQKPVFESDDYLHIQLQLFPPFGKYFNRSEILRIASALSYQTFLLSPDLGSFYFIPLDQYNFLAPDVGNFSSISNRWLIGIAIGCGLLLLTLFGVGVYAIKQKKRVSKAISLSKPFASWSSIEQITGEAPQLKGAIYFSYDELRKLTNNFSISNEIGAGGYGKVYRGITGYGQVFAIKRARQGSKQGAHEFKTEIELLSRVHHKNLVGLVGFCCEQGEQMLVYEFMPYGSLRDILGIIFRARCAIIILIGFNTLIMITLFLQLRGNLLLFTGNKPYLNFSFLKGFQNSSCFLTLTQSRNGHMIFRSFSFNLFVLGIIRSCVHLDWKRRLEIALDSARGLAYLHEFANPPIIHRDIKSSNILLDEYFNAKVADFGLSKLVFDHEKGHISTGVKGTWMKTYKDRVTRKAKAKACIYAAVAPVVFNRIMALKLTKEICEFLKGYGEYLEVTGKDMVSIESRA 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 74882 90638 - ClG42_02g0000200.10 Clacu02g0002 242070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0002 906 Gene3D Phosphorylase Kinase; domain 1 563 672 - -
Clacu02g0002 906 SUPERFAMILY Protein kinase-like (PK-like) 574 842 IPR011009 -
Clacu02g0002 906 Gene3D Ribonuclease Inhibitor 191 369 IPR032675 -
Clacu02g0002 906 ProSitePatterns Protein kinases ATP-binding region signature. 603 625 IPR017441 GO:0005524(InterPro)
Clacu02g0002 906 FunFam Leucine-rich repeat protein kinase family protein 187 286 - -
Clacu02g0002 906 ProSiteProfiles Protein kinase domain profile. 597 906 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0002 906 FunFam Leucine-rich repeat family protein 30 186 - -
Clacu02g0002 906 SUPERFAMILY L domain-like 34 302 - -
Clacu02g0002 906 Gene3D Transferase(Phosphotransferase) domain 1 747 847 - -
Clacu02g0002 906 Pfam Protein tyrosine and serine/threonine kinase 599 833 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g0002 906 Pfam Leucine rich repeat N-terminal domain 29 66 IPR013210 -
Clacu02g0002 906 SMART serkin_6 597 885 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0002 906 PANTHER RECEPTOR-LIKE PROTEIN 55 42 843 - -
Clacu02g0002 906 FunFam Os07g0541700 protein 753 841 - -
Clacu02g0002 906 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515(InterPro)
Clacu02g0002 906 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
Clacu02g0002 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g0002 906 Gene3D Ribonuclease Inhibitor 29 190 IPR032675 -
Clacu02g0002 906 FunFam receptor-like protein kinase FERONIA 564 672 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0002 Clacu-Chr2:74882 Clacu10g1313 Clacu-Chr10:26166444 5.10E-185 dispersed
Clacu02g0002 Clacu-Chr2:74882 Clacu10g2252 Clacu-Chr10:35437174 3.10E-214 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73304 PF07714 PK_Tyr_Ser-Thr 3.40E-28 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0002 - - - 0.0