Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0026 ATGGGGAAAGGACCGTTTTCTTTCCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGCGGTTCATTCGTCACCGTCCTCGTCGCCACAGCCACCTCCGCAGATTAGCACCAGTTCTCCTCCCATTAACAATAATGGGAATGGCTTGGTTGGTGGTGGGGGTGGTGGGGTTGTGGGAAAAGTGAAGAAGAAGGCCGGAGGAGCTAGGCTGTGGATGCGTCTCGACAGGTGGGGGCAAGCGGAGCTTTTAGAGTGGGACAAGAATGCTATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAGCATACTCGCCAGCGAAAAGGCCATGGTTGTTCATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTATTACTTCACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTTGCTAAGACGGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTGCTGAAGGTGAGCAGTATGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTTGTGTGCATGTACTTGGATTCCAGTGTGGCAGACCTTGAGAGAGACGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGTGTTCAGAAGGTGCGGGATGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATACTTTGCCGGGAGGTGTGGCTTCCAACAGCACGACTGCTATCGTTCCTCATCTTCGTCTACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACGTAGAGGACTTGGAGATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGATGACACCGAGGATTATGTTAATATTCAACTTGACAACCAAAGAAATGAACTTATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCCATAGCTGTTGA 1170 46.67 MGKGPFSFRRSSSRRRPKKAVHSSPSSSPQPPPQISTSSPPINNNGNGLVGGGGGGVVGKVKKKAGGARLWMRLDRWGQAELLEWDKNAIIRRAAIPARDLRILGPVFSHSSSILASEKAMVVHLEFIKAIVTAEEVLLLHPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDTLPGGVASNSTTAIVPHLRLLSSTRSGSVVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAHSC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 304551 309339 - ClG42_02g0002600.10 Clacu02g0026 242094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0026 389 FunFam Magnesium transporter MRS2-1 59 142 - -
Clacu02g0026 389 Gene3D Magnesium transport protein CorA, transmembrane region 144 373 - -
Clacu02g0026 389 CDD Mrs2_Mfm1p-like 71 386 IPR039204 -
Clacu02g0026 389 MobiDBLite consensus disorder prediction 1 55 - -
Clacu02g0026 389 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 57 388 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Clacu02g0026 389 Coils Coil 240 274 - -
Clacu02g0026 389 Gene3D - 59 141 - -
Clacu02g0026 389 Pfam Magnesium transporter MRS2-like 84 286 - -
Clacu02g0026 389 Pfam Magnesium transporter MRS2-like 323 370 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0026 Clacu-Chr2:304551 Clacu06g0654 Clacu-Chr6:7554218 2.30E-73 dispersed
Clacu02g0026 Clacu-Chr2:304551 Clacu07g0056 Clacu-Chr7:921929 5.10E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0026 K16075 - csv:101203496 617.076