Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0028 ATGGCCACTAGGCTTATGTTTGAGAACTCATGTGAAATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCCTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTACGTTCGAAACTGAATTAGGTGGTGTCATTCCGGTCGTTAAAACATCTATTGATGGCACTCGCATTATTGGCCGTCTATGTGCTGGAAACAAAAATGGGCTTCTTGTACCACACACCACTACTGACCAAGAACTTCAGCACTTGAGGAACAGCCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGATTGTCTGCTCTGGGGAATACCATTGCTTGTAATGATCATGTTGCTCTCACACATACTGATCTTGATCGGGAAACTGAAGAGCTCATTGCTGATGTTCTTGGAGTGGAGGTCTTTAGGCAGACAGTAGCGGGCAACGTCCTTGTGGGAAGCTACTGTAGCTTCACGAATAGGGGTGGCTTGGTTCATCCACATACGTCTGTTGAAGATCTGGATGAGCTATCAACCCTTCTTCAGGTCCCTTTAGTTGCTGGAACCGTGAATCGTGGAAGTGAAGTGATTGCTGCTGGATTGACAGCAAATGATTGGACCGCGTTTTGTGGTTCAGACACCACGGCCACCGAGTTATCGGTCATCGAGAGCGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCGCTAATAGATAGTTACGTATGA 738 45.8 MATRLMFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFETELGGVIPVVKTSIDGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTDLDRETEELIADVLGVEVFRQTVAGNVLVGSYCSFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIESVFKLREAQPSSIVEEMRKSLIDSYV 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 342160 345139 + ClG42_02g0002800.10 Clacu02g0028 242096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0028 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Clacu02g0028 245 CDD IF6 2 223 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Clacu02g0028 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 244 IPR002769 GO:0000054(PANTHER)|GO:0000460(PANTHER)|GO:0000470(PANTHER)|GO:0005730(PANTHER)|GO:0005829(PANTHER)|GO:0030687(PANTHER)|GO:0042256(InterPro)|GO:0043022(InterPro)|GO:0043023(PANTHER)|GO:1902626(PANTHER)
Clacu02g0028 245 FunFam Eukaryotic translation initiation factor 6 1 225 - -
Clacu02g0028 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Clacu02g0028 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Clacu02g0028 245 NCBIfam translation initiation factor IF-6 4 224 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
Clacu02g0028 245 Gene3D - 1 225 - -
Clacu02g0028 245 SUPERFAMILY Pentein 1 224 - -
Clacu02g0028 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256(InterPro)|GO:0043022(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0028 Clacu-Chr2:342160 Clacu06g1285 Clacu-Chr6:23801612 9.10E-137 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0028 K03264 - csv:101212091 462.225