Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0062 ATGCTCCCCAGAAAACCCCCATTCCCTTTCCCCATTTCCAAATCCACTCTCCTTTTCCTCTCCATGGCTTCCCTCTCCTTCCTCTCTTTCCTCTCCCTCTTCTTCTTCTTCCTCTCTCTCTCCTCCTCCTCCGCCGCCGCTCGCCATCGCCACCACCACCTCCCAACCCATTTCACCAACCCCCCTTCCACCGACGACGTCATCCTTCACGCCTGCAAGGCCACCCGTTTTCCCGATCAATGCGGATCTTCCCTCTCTCACTCCTCCTCTCTCCCTCCCAATCCTACCCCTCTCCAGATCCTCCAATCCGCCGTCGCCCTCTCATCCGACGGTTTAGCCACTGCTCAATCCATGGTTAACCAGATTCTCGATTCCTCCGCCAAGAATCTCAATCGGACCACCGCTGCCAAGAACTGCCTTGAGGTACTGCGGAATTCCGATTACCGTATTTCTCTCACCAACGACGCTCTCCGCCGTGGTCGGACCAAGGACGCCCGCGCCTGGCTGAGTGCGTCCCTACTTTACCATTACGATTGCTGGTCTGCGCTCAAGTACGCCAACGACACTCAATTGGTTGACAAAACCATGGCGTTTCTCGATTCTCTTATTGGTCTCTCCAGCAACGCGCTGAGTATGTTGGTGGCTTACGACATTTCCGGCAACGATACGGCGGCGTGGACGCCGCCGAGGACTGAGCGGGATGGGTTTTGGGAAGGCGGTGGTGGCGGATCTGGGTTGGGGTTTAGCGGTGGGTTTCCGTCGAAGGTGGCGGCTGATGCGACGGTGTGCAAGGATGGCGCTGGGGGATGTTATAAAACTGTTCAGGAAGCTGTTAACGCGGCGCCGGAGAATGCGGCGGCGCGTAGGTTTGTGATTCATATTAAGGAAGGTGTTTATGAGGAAATCGTGAGGGTTCCGTTAGAGAAGAAGAATGTGGTGTTTTTAGGAGATGGGATGGGCAAAACGGTCATTACGGGCTCACTTAATGTGGGCCAGCCTGGGATTTCCACTTACAACACCGCCACCGTTGGAGTACTTGGTGATGGATTCATGGCTAGCGGTCTCACCATTCAAAACACAGCAGGGCCAGATGCTCATCAAGCTGTGGCTTTTAGATCAGACAGTGATCTCTCAGTTATTCAAGACTGTGAGTTTCTAGGCAATCAAGACACTCTCTATGCTCACTCCCTTCGCCAATTCTACAAATCTTGTAAGATTCAAGGCAATGTAGATTTCATCTTTGGAAACTCAGCTTCCATCTTCCAAGACTGCGAGATCCTAGTTCGCCCCAGACAGCTCAAGCCTGAGAAAGGTGAAAACAACGCCATCACTGCTCAGGGCAGGACCGACCCTGCTCAAGCGACAGGGTTCGTATTCCAAAACTGCCTCATAAATGGCACTCAGGAGTACATGTCATTGTACTACAGCAAGCCTAAAGTGCATAAAAACTACTTGGGGAGACCGTGGAAGGAGTACTCGAGGACAGTTTTTATACATTGTACTCTCGAGGCTCTTGTCACGCCTGCGGGGTGGATGCCATGGAGTGGGGATTTTGCATTGAAGACTCTTTTCTATGGAGAGTTTGAGAATTCGGGAGCGGGGTCGAAGACATCGGAGAGAGTCGGGTGGAGTAGTCAGATTCCAGCACAACATGTTTTTAGTTACTCTGTTCAAAATTTCATTCAGGGAGACGAATGGATTCCTTCATCTCAGTCATCTAATGAACCAAAAATGTTGAACAAGAAAAGTAAAGATGTGAAATTAGATTAG 1770 51.41 MLPRKPPFPFPISKSTLLFLSMASLSFLSFLSLFFFFLSLSSSSAAARHRHHHLPTHFTNPPSTDDVILHACKATRFPDQCGSSLSHSSSLPPNPTPLQILQSAVALSSDGLATAQSMVNQILDSSAKNLNRTTAAKNCLEVLRNSDYRISLTNDALRRGRTKDARAWLSASLLYHYDCWSALKYANDTQLVDKTMAFLDSLIGLSSNALSMLVAYDISGNDTAAWTPPRTERDGFWEGGGGGSGLGFSGGFPSKVAADATVCKDGAGGCYKTVQEAVNAAPENAAARRFVIHIKEGVYEEIVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGVLGDGFMASGLTIQNTAGPDAHQAVAFRSDSDLSVIQDCEFLGNQDTLYAHSLRQFYKSCKIQGNVDFIFGNSASIFQDCEILVRPRQLKPEKGENNAITAQGRTDPAQATGFVFQNCLINGTQEYMSLYYSKPKVHKNYLGRPWKEYSRTVFIHCTLEALVTPAGWMPWSGDFALKTLFYGEFENSGAGSKTSERVGWSSQIPAQHVFSYSVQNFIQGDEWIPSSQSSNEPKMLNKKSKDVKLD 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 631514 634138 + ClG42_02g0006200.10 Clacu02g0062 242130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0062 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 66 212 IPR035513 -
Clacu02g0062 589 MobiDBLite consensus disorder prediction 567 589 - -
Clacu02g0062 589 NCBIfam pectinesterase inhibitor domain 31 212 IPR006501 GO:0004857(InterPro)
Clacu02g0062 589 Gene3D - 253 576 IPR012334 -
Clacu02g0062 589 FunFam Pectinesterase 253 578 - -
Clacu02g0062 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 215 IPR035513 -
Clacu02g0062 589 PANTHER PECTINESTERASE 29 569 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu02g0062 589 SUPERFAMILY Pectin lyase-like 256 569 IPR011050 -
Clacu02g0062 589 SMART PMEI_2 63 212 IPR006501 GO:0004857(InterPro)
Clacu02g0062 589 Pfam Pectinesterase 259 564 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu02g0062 589 FunFam Probable pectinesterase/pectinesterase inhibitor 51 66 215 - -
Clacu02g0062 589 Pfam Plant invertase/pectin methylesterase inhibitor 68 212 IPR006501 GO:0004857(InterPro)
Clacu02g0062 589 CDD PMEI-like_3 71 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0062 Clacu-Chr2:631514 Clacu05g0865 Clacu-Chr5:7575506 6.70E-85 dispersed
Clacu02g0061 Clacu-Chr2:626146 Clacu02g0062 Clacu-Chr2:631514 5.40E-211 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0062 - - - 0.0