Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0064 ATGACTCCAGCTTTCTCCTCATCCGACGCCGCCGCCCAGCGACTTATCCGCTGCAGTGCCTCGCTCCGTCGCACCCACGCCCCGCACCGACCCTCCTCGATGTCACCTCCACCGAGGAAGCTGAAGCCAATGACGGAGATAATGGCCAAGGCAAAGTATGTGGTTCTCGAACGGGACGATTACGACGACGTTAGGTGCGAGGAATGTGGCTCCGGCGACCGGGATGATGAGCTGCTGTTGTGTGACAAATGCGATAAGGGATTTCATATGAAATGTGTAAGTCCGATCGTTGTTAGGGTCCCGATTGGATCCTGGCTTTGCCCCAAATGCTCTGGCCAAAGAAGAGTAAGAAGCTTTTCTCAGAAGAAGATTATCGATTTTTTCAGAATTCAGAAATGTAAGGACGCAGAAGTCCCATATCTGTCTGCTCAAGCTATAAAGCGTAGGAGACGATTACGGTCATTGGTGTGGCAGAAGAAAAGGAGAAGATTACTACCATTTCTTCCAAGTGAAGATCCTGATCGCAGATTGAAACAGATGGGTTCACTTGCTACAGCTTTAACAACATTGCAAATGGAGTTTAGTGATGATTTGACTTATGTGCCAGGCATGGCTTCCAGGTCTGCTAATCAGGCAGAGTTTGAAGAGGGTGGAATGCAGGTTCTTTCCAAAGAGGATACTGAGACCTTGGAACTCTGCAGAGCCATGAGCAGAAGAGGCGAATGCCCTCCCCTTTTGGTTGTTTTTGATTCATGTGAAGGTTTTACGGTAGAAGCTGATGATCAAATTAAGGATATGACGTTTATCGCTGAATATACTGGTGACGTGGATTATCTTAAGAACCGTGAACACGATGATTGTGATAGTATGATGACCCTTCTTTCAGCAAAAGATCCATCTAGAAGTCTTGTCATCTGCCCTGACACACGTGGGAACATTGCTCGATTTATTAATGGAATAAATAACCATTCTCCAGAAGGTAAGAAGAAACAGAACTGTAAATGTGTGAGATACAATGTAAACGGCGAATGTCGAGTCATTTTGGTTGCTATTCGGGATATTGCTAAAGGGGAGAGGCTTTATTATGACTACAATGGATATGAGTATGAGTACCCTACTCATCATTTCGTTTGA 1134 45.59 MTPAFSSSDAAAQRLIRCSASLRRTHAPHRPSSMSPPPRKLKPMTEIMAKAKYVVLERDDYDDVRCEECGSGDRDDELLLCDKCDKGFHMKCVSPIVVRVPIGSWLCPKCSGQRRVRSFSQKKIIDFFRIQKCKDAEVPYLSAQAIKRRRRLRSLVWQKKRRRLLPFLPSEDPDRRLKQMGSLATALTTLQMEFSDDLTYVPGMASRSANQAEFEEGGMQVLSKEDTETLELCRAMSRRGECPPLLVVFDSCEGFTVEADDQIKDMTFIAEYTGDVDYLKNREHDDCDSMMTLLSAKDPSRSLVICPDTRGNIARFINGINNHSPEGKKKQNCKCVRYNVNGECRVILVAIRDIAKGERLYYDYNGYEYEYPTHHFV 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 645190 648299 - ClG42_02g0006400.10 Clacu02g0064 242132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0064 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 125 IPR013083 -
Clacu02g0064 377 FunFam Histone-lysine N-methyltransferase ATXR5 149 377 - -
Clacu02g0064 377 SMART set_7 243 371 IPR001214 GO:0005515(InterPro)
Clacu02g0064 377 ProSitePatterns Zinc finger PHD-type signature. 66 110 IPR019786 -
Clacu02g0064 377 ProSiteProfiles SET domain profile. 243 365 IPR001214 GO:0005515(InterPro)
Clacu02g0064 377 PANTHER SET DOMAIN-CONTAINING PROTEIN 125 377 IPR053114 -
Clacu02g0064 377 Gene3D SET domain 149 377 IPR046341 -
Clacu02g0064 377 SMART PHD_3 65 111 IPR001965 -
Clacu02g0064 377 SUPERFAMILY SET domain 237 366 IPR046341 -
Clacu02g0064 377 Pfam PHD-finger 66 110 IPR019787 -
Clacu02g0064 377 CDD SET_ATXR5_6-like 240 377 - -
Clacu02g0064 377 Pfam SET domain 254 365 IPR001214 GO:0005515(InterPro)
Clacu02g0064 377 ProSiteProfiles Zinc finger PHD-type profile. 63 113 IPR019787 -
Clacu02g0064 377 SUPERFAMILY FYVE/PHD zinc finger 32 111 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0064 K24406 - - csv:101221402 700.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0029 Clacu-Chr1:286516 Clacu02g0064 Clacu-Chr2:645190 6.80E-102 dispersed
Clacu02g0064 Clacu-Chr2:645190 Clacu09g0524 Clacu-Chr9:4494992 7.20E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1273 Blo04g00967 . . . Bpe15g00400 . . . Cmo02g00627 Cmo20g01075 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01056 . . Bma03g01031 . . . . . Cma20g01067 . . Cpe05g01065 Cpe16g00078 Bhi10g01661 . . . . . . Cla02g00064 Cam02g0065 Cec02g0067 Cco02g0060 Clacu02g0064 Cmu02g0064 Cre02g0403 . . . Cme11g00068
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47158 PF00856 SET 3.90E-08 No_clan Clacu TR