Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0071 ATGGCTGATGCTGAGGATATCCAGCCACTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCCGGTGATGATGCTCCCAGAGCAGTGTTTCCCAGTATTGTTGGTCGACCTCGACACACTGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTACGTTGGTGACGAGGCCCAATCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCACCTGAAGAACACCCAGTGCTTCTTACCGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAAACTTTCAATGTACCTGCCATGTATGTTGCCATCCAGGCCGTTCTATCTCTGTATGCCAGTGGTCGTACAACAGGTATTGTGCTCGACTCTGGTGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGTTATGCTCTACCCCATGCTATCCTCCGTCTGGACCTTGCTGGTCGTGATCTAACTGATGCTTTGATGAAGATTCTCACTGAGAGAGGGTACATGTTCACAACCACTGCCGAACGGGAAATTGTCCGTGACATGAAAGAGAAGCTTGCTTATGTTGCACTCGACTATGAGCAGGAACTGGAGACTGCTAAGAGTAGCTCCTCAATTGAGAAGAACTATGAACTGCCCGATGGACAAGTCATCACAATTGGAGCTGAGAGATTCCGTTGCCCCGAAGTTCTTTTCCAGCCATCCCTCATTGGAATGGAAGCTGCTGGAATCCACGAGACTACCTACAACTCAATTATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGAAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATCGCTGACCGTATGAGCAAAGAGATCACAGCTCTTGCTCCCAGCAGCATGAAAATCAAGGTCGTTGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGATCAATCCTTGCATCGCTCAGCACCTTCCAGCAGATGTGGATTTCAAAGGGCGAGTACGACGAATCTGGCCCATCCATTGTCCACAGGAAGTGCTTCTAA 1134 47.0 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 723767 725209 + ClG42_02g0007100.10 Clacu02g0071 242139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0071 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Clacu02g0071 377 Gene3D - 10 371 - -
Clacu02g0071 377 PRINTS Actin signature 51 62 IPR004000 -
Clacu02g0071 377 PRINTS Actin signature 63 85 IPR004000 -
Clacu02g0071 377 PRINTS Actin signature 142 161 IPR004000 -
Clacu02g0071 377 PRINTS Actin signature 28 37 IPR004000 -
Clacu02g0071 377 PRINTS Actin signature 117 130 IPR004000 -
Clacu02g0071 377 PRINTS Actin signature 238 254 IPR004000 -
Clacu02g0071 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Clacu02g0071 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Clacu02g0071 377 FunFam Major actin 261 340 - -
Clacu02g0071 377 FunFam Actin, muscle 182 273 - -
Clacu02g0071 377 SUPERFAMILY Actin-like ATPase domain 148 377 IPR043129 -
Clacu02g0071 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Clacu02g0071 377 SMART actin_3 7 377 IPR004000 -
Clacu02g0071 377 FunFam Putative actin-related protein 5 341 369 - -
Clacu02g0071 377 Gene3D - 140 340 - -
Clacu02g0071 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Clacu02g0071 377 Pfam Actin 5 377 IPR004000 -
Clacu02g0071 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Clacu02g0071 377 FunFam Actin, alpha skeletal muscle 3 180 - -
Clacu02g0071 377 PANTHER ACTIN 8 369 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0071 Clacu-Chr2:723767 Clacu10g1739 Clacu-Chr10:30918767 2.00E-215 dispersed
Clacu09g1411 Clacu-Chr9:19447196 Clacu02g0071 Clacu-Chr2:723767 1.30E-212 transposed
Clacu11g0937 Clacu-Chr11:9066252 Clacu02g0071 Clacu-Chr2:723767 5.00E-97 transposed
Clacu01g1629 Clacu-Chr1:28384949 Clacu02g0071 Clacu-Chr2:723767 1.00E-219 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0071 K10355 - csv:101215469 758.059