Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0081 ATGGCAAAATCACCCGAAGATGAACACCCAATCAAGGCTTTCGGATGGGCTGCCCGAGATACATCCGGGTTACTCTCCCCCTTCCATTTCTCTAGAAGGGAAAATCGTGATGATGATGTCAGTATCAAAGTCCTTTACTGTGGGGTTTGCCATTCTGATCTACATTTGCTCAAGAATGATTGGGGTGTCACAAATTATCCAATTGTCCCAGGGCATGAGATTGTCGGTGTTGTGACCTCTGTTGGAAAGAATGTGAAGAAATTCAAAGCAGGCGATCAAGTTGGGGTTGGTGTCATAGTTGGATCTTGCAGAAGTTGTGAAAATTGTGAACAAGACTTGGAGAATTACTGCCCCAAGATGACATATACTTACAACTCACATTCATCTGATGGAGAAAAGACTTACGGTGGTTATTCTGATAAGATCGTTGTTGATCAGCATTTCGTTCTCCGATTTCCTGACAACTTACCCCTTGATGCTGGAGCTCCACTTCTTTGCGCTGGAATCACAATTTATAGCCCTATGAAATACTATGGAATGACTGAATCTGGTAAGCATTTGGGTGTGGTTGGTCTTGGTGGGCTTGGTCATGTTGCTGTTAAGTTTGGTAAGGCATTTGGGTTGAAAGTTACTGTCATTAGTACCTCTCCAAGAAAGAAGGAGGAAGCCATTGACAGGCTCGGTGCCGATGCTTTCGTTGTTTCAAGTGATCCCCCACAATTAAAGGCCGCCATGGGGACGATGGATTACATTATCGACACGGTATCCGCTATCCATGCTCTTGCTCCATTGCTTGGTCTGCTAAAACTGAATGGAAAGTTGGTCACTGTGGGTTTACCTAACAAGCCCCTTGAGCTGCCAGTTGCTTCTCTAGTTCTCGGTAGGAGGATGGTTGGTGGAAGCAACTTTGGAGGGCTGAAAGAGACACAAGAGATGTTGGATTTCTGTGCTCAGCACAACATCACAGCAGAGATTGAGCTCATTAAGATGGATGAAATTAACAAGGCCATCGAAAGACTTGCAAAAGCCGATGTTCGATACCGGTTCGTGATAGACATTGCAAACTCCTTGAAATAG 1077 44.75 MAKSPEDEHPIKAFGWAARDTSGLLSPFHFSRRENRDDDVSIKVLYCGVCHSDLHLLKNDWGVTNYPIVPGHEIVGVVTSVGKNVKKFKAGDQVGVGVIVGSCRSCENCEQDLENYCPKMTYTYNSHSSDGEKTYGGYSDKIVVDQHFVLRFPDNLPLDAGAPLLCAGITIYSPMKYYGMTESGKHLGVVGLGGLGHVAVKFGKAFGLKVTVISTSPRKKEEAIDRLGADAFVVSSDPPQLKAAMGTMDYIIDTVSAIHALAPLLGLLKLNGKLVTVGLPNKPLELPVASLVLGRRMVGGSNFGGLKETQEMLDFCAQHNITAEIELIKMDEINKAIERLAKADVRYRFVIDIANSLK 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 834967 837807 + ClG42_02g0008100.10 Clacu02g0081 242149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0081 358 Gene3D - 16 353 - -
Clacu02g0081 358 FunFam probable cinnamyl alcohol dehydrogenase 16 176 - -
Clacu02g0081 358 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
Clacu02g0081 358 PANTHER ALDEHYDE REDUCTASE 5 356 IPR047109 GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER)
Clacu02g0081 358 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491(InterPro)
Clacu02g0081 358 Gene3D - 167 323 - -
Clacu02g0081 358 SUPERFAMILY GroES-like 9 199 IPR011032 -
Clacu02g0081 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Clacu02g0081 358 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Clacu02g0081 358 Pfam Alcohol dehydrogenase GroES-like domain 37 154 IPR013154 -
Clacu02g0081 358 CDD CAD1 14 352 IPR047109 GO:0016616(InterPro)
Clacu02g0081 358 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0121 Clacu-Chr1:1160681 Clacu02g0081 Clacu-Chr2:834967 2.80E-102 dispersed
Clacu01g1893 Clacu-Chr1:31070339 Clacu02g0081 Clacu-Chr2:834967 2.10E-150 dispersed
Clacu02g0081 Clacu-Chr2:834967 Clacu05g1707 Clacu-Chr5:25869105 1.30E-120 dispersed
Clacu02g0080 Clacu-Chr2:822500 Clacu02g0081 Clacu-Chr2:834967 1.70E-179 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0081 K00083 - csv:101205228 600.512