Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0092 ATGTCTCTTCTTCATCCCTCTTTTCCAACTTCTAAGTTGTCTGCCTTTTGTCCCATCACCGGTGGAGCTATCATTGTTGGAAAAGTTCCCGACGACTATTGTGTTCGACGATCTATAAATTATTATCAACCTCCTACTATAATGTTAAAATCACTTGGACTTGGACCTCGGATGTGCTTAAAAGCATCAACACAATCTGATAATGTTATTGTGAGACAATGTGCAAATTATCATCCTCCTATGTGGAAAGATGAATTTATTCAATCATTACATAATGAATTTGGGGGAGAAACATATCAAAGACGGTTCAATCAACTCAAAGGGCAAGTTAAAACATTATTGCTTAATGAAAGAAGAGACTCTTTGGAACAACTTGAGCTCATTGATGTGTTGCAAAGACTTGGAATATCATACCACTTTGAGAATGAAATTAAAGATAGATTAGCAAGAATAAGCAACAAGTTACACGAAAAGGGCGGGAAGAAGAATAGTCTCTATGCAACCTCTCTTGAATTTAGACTCTTAAGACAACATCAATTTGATATTTCTGAAGAGGTTTTCAATGCCTTCAAAGATGAGATGGGAGATTTCAAAACATGCTTTTATGAAGATACAAATGGAATGTTATCTTTATATGAAGCTTCATTCTTATCAACCAAAGGGGAAACTACTTTAGAGGCAGCAAAATGCTTTGCAATCAACTATCTAAAGGAATACATCAAATCAAGTAAAGATGAACTCAAAGTAGAGATTGTAAAGCATGCCTTGGAGCTTCCCTTACATTGGAGAATACAAAAATTAGAGGCAAGATGGTTTATTGATATATATGAGAGGAAAGGAACCATAAATCCTATTCTTCTTGAAATGGCTAAGCTTGATTTCAACATGCTGCAATCTATCTACCAAGAAGATCTTAAATATGCATCAAGTTGGTGGAGAAACACAGAGCTTGGAGAAAAGTTGAGCTTTGCAAGAGACCAGTTGATGGAGAACTTCTATTGGACAATAGGCATTGGATTTGAACCTGAGCTTACATATTTTAGAAGAATGGGTACAAAGATTGTGTCTTTGATAACAATGATTGACGATGTTTATGATGTCTATGGCACATTGGATGAACTCAAACTCTTTACGAATGCTATAGAGAGGTGGGATATTGCTGCAATTGACCAACTTCCAGAGTATATGAAACAATGCTTTCTTACTCTCTATAATGCAATAAATGAGATAGCTTCTGAAGCACTAAGCAACCATGGAGTTGATGTCATGCAATACCTTAAGAAAGGGTGGGTAGATTTGTGCAAATCTTATTTAGTAGAGTCAAATTGGTATCATAATGGTTATAAACCAACAATGCAAGAATATATGAACAATGCATGGATTTCAGTAGCTGGACCAATTATGTTAGTCCATTCCTATGTTTTTGTATCATCTCAAATAACAAAGGAGGAATTGGAGAGATTGACAACATATGCAGACACAATTCGTTGGTCATCAACAATTATGCGACTTGCAAATGACCTACTGACACCATTGGATGAACAAAACATCGGTGATATTCCAAAATCAATTCAATGTTGCATGATTGAGATGGGTGCTTCAGAAAAAAATGCTCGTGAATATATAAGACATTTGGTAGATGAGTTATGGAAGAAGTTAAATGAATTTGAAGATGAGAAACTTGTATCGTCTTCACAAACATTCGTCGAGATGTCTAAAAATCTTGCACGAATAGCTCAATTCAATGCCACAAAAAGCCATTTTAGTCCTGCGTCGGGAAAGGGTACCTATCCCGATGGAAGGAAAATTGTTTTTGTTATTGTTTTGAATGTGGGAGCGAGAATAATGTTGTTGCTCTAA 1860 35.75 MSLLHPSFPTSKLSAFCPITGGAIIVGKVPDDYCVRRSINYYQPPTIMLKSLGLGPRMCLKASTQSDNVIVRQCANYHPPMWKDEFIQSLHNEFGGETYQRRFNQLKGQVKTLLLNERRDSLEQLELIDVLQRLGISYHFENEIKDRLARISNKLHEKGGKKNSLYATSLEFRLLRQHQFDISEEVFNAFKDEMGDFKTCFYEDTNGMLSLYEASFLSTKGETTLEAAKCFAINYLKEYIKSSKDELKVEIVKHALELPLHWRIQKLEARWFIDIYERKGTINPILLEMAKLDFNMLQSIYQEDLKYASSWWRNTELGEKLSFARDQLMENFYWTIGIGFEPELTYFRRMGTKIVSLITMIDDVYDVYGTLDELKLFTNAIERWDIAAIDQLPEYMKQCFLTLYNAINEIASEALSNHGVDVMQYLKKGWVDLCKSYLVESNWYHNGYKPTMQEYMNNAWISVAGPIMLVHSYVFVSSQITKEELERLTTYADTIRWSSTIMRLANDLLTPLDEQNIGDIPKSIQCCMIEMGASEKNAREYIRHLVDELWKKLNEFEDEKLVSSSQTFVEMSKNLARIAQFNATKSHFSPASGKGTYPDGRKIVFVIVLNVGARIMLLL 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 958186 963696 - ClG42_02g0009200.10 Clacu02g0092 242160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0092 619 Pfam Terpene synthase family, metal binding domain 314 552 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Clacu02g0092 619 CDD Terpene_cyclase_plant_C1 72 581 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Clacu02g0092 619 Gene3D Farnesyl Diphosphate Synthase 79 581 IPR008949 -
Clacu02g0092 619 Gene3D - 119 282 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Clacu02g0092 619 FunFam Isoprene synthase, chloroplastic 119 281 - -
Clacu02g0092 619 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 78 280 IPR008930 -
Clacu02g0092 619 PANTHER OS04G0344100 PROTEIN-RELATED 76 581 - -
Clacu02g0092 619 FunFam Isoprene synthase, chloroplastic 263 589 - -
Clacu02g0092 619 SFLD Isoprenoid Synthase Type I 283 585 - -
Clacu02g0092 619 SFLD Terpene Cyclase Like 1 C Terminal Domain 283 585 IPR034741 -
Clacu02g0092 619 Pfam Terpene synthase, N-terminal domain 81 256 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Clacu02g0092 619 SUPERFAMILY Terpenoid synthases 283 581 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0092 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0090 Clacu-Chr2:930160 Clacu02g0092 Clacu-Chr2:958186 4.80E-163 dispersed
Clacu02g0092 Clacu-Chr2:958186 Clacu10g0364 Clacu-Chr10:4614998 7.00E-93 dispersed
Clacu02g0091 Clacu-Chr2:937680 Clacu02g0092 Clacu-Chr2:958186 2.00E-306 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1179 . . Bda04g00218 . . . . . . . . Cma07g00388 . Car07g00341 . Cpe19g00894 . . . . . . . . Cla01g02032 Cam01g2138 Cec04g1795 Cco04g1861 Clacu01g2154 Cmu01g2030 Cre04g1705 Cone6ag0020 Cone9ag0019 Cone14ag1210 Cone15ag1229 Lsi01g00537 . . Cme08g00989 Blo05g00679 . . . . Bpe06g00157 . . . . Cmo07g00382 . . . . . . Bhi10g02361 . . . . . . Cla02g00088 Cam02g0095 Cec02g0096 Cco02g0088 Clacu02g0092 Cmu02g0087 Cre02g0426 Lsi10g00685 Csa06g03394 Chy02g00512 Cme11g00099
Vvi12g505 . . . Bda13g00647 . . . . . . . . . . . . . . . . . . . . Cla02g00088 Cam02g0095 Cec02g0096 Cco02g0088 Clacu02g0092 Cmu02g0087 Cre02g0426 Cone3ag1386 Cone10ag1319 . . . . Chy11g01082 . . . . . Bpe14g00673 . Bma02g01357 Bma12g00758 Sed01g0684 . . . . . . Cpe16g00475 . Bhi10g01174 Tan05g0809 Cmetu01g1616 . Hepe08g0514 . . . . . . . . . . Csa06g01049 . Cme11g01081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000137 1 8 0 1 1 7 0 6 4 10 5 6 7 12 9 17 5 9 1 4 8 13 11 8 9 6 7 10 13 4 202