Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0102 ATGGGTTCTAAATCCCAAGTCCTATTGAACCCACAAGCTTTGTTTGAAGATCATCAAGATCATGAAGTGGCAGCAAATTCTCAAATGGGTTTCTTCAATTTCCCTTCAAACTTAACTTTTCTCCAACTTCCTTCAATTCCTCAAACCCATTCTCCTTCCCCTCCATTTGATCCTCCAAATTTCTCCATTTCTAGTAATAATACTAATAATAATAACAATAATAGTAATTCCAATCTCAATGAAACCCTACTTTCTTCTTCTCTTTTGCCCCTCAAGCCCTCCCTTTCCTATGAATTTGCACCTCAACACCTCCTTTCCTTGCAAACATCCACTCCAAATCTATGGCCATGGGGAGAGATTGGAGAAAAGTTGATGAATGGGAAGAGATCAAATAATGAGAATCATCAATTGGGAGTGTCAACAATGAAGATGAAGAAAATGAAAGGAAGAAGAAAAGTGAGAGAACCAAGATTCTCATTCAAGACCATGAGCGATGTTGATGTTCTTGATGATGGTTACAAATGGCGAAAATACGGACAGAAAGTGGTCAAAAACACACAACATCCTAGAAGCTATTATCGTTGTACACAAGATCACTGTAGGGTAAAGAAACGAGTAGAAAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACATGTTCATTCTCCTTCCCATGATTCTGAAGACTCCGAAGCTCAAACCCATCTCAATAATTTCTTTTGGTAA 741 38.06 MGSKSQVLLNPQALFEDHQDHEVAANSQMGFFNFPSNLTFLQLPSIPQTHSPSPPFDPPNFSISSNNTNNNNNNSNSNLNETLLSSSLLPLKPSLSYEFAPQHLLSLQTSTPNLWPWGEIGEKLMNGKRSNNENHQLGVSTMKMKKMKGRRKVREPRFSFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQTHLNNFFW 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1091435 1093424 - ClG42_02g0010200.10 Clacu02g0102 242170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0102 246 FunFam WRKY transcription factor 57 155 229 - -
Clacu02g0102 246 ProSiteProfiles WRKY domain profile. 164 229 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g0102 246 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 50 232 IPR044810 GO:0003700(InterPro)
Clacu02g0102 246 Gene3D WRKY domain 156 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g0102 246 MobiDBLite consensus disorder prediction 45 79 - -
Clacu02g0102 246 SMART WRKY_cls 169 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g0102 246 Pfam WRKY DNA -binding domain 170 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g0102 246 SUPERFAMILY WRKY DNA-binding domain 161 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu02g0102 246 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g1657 Clacu-Chr1:28674368 Clacu02g0102 Clacu-Chr2:1091435 3.30E-46 dispersed
Clacu02g0102 Clacu-Chr2:1091435 Clacu08g1185 Clacu-Chr8:21832800 1.20E-27 dispersed
Clacu02g0102 Clacu-Chr2:1091435 Clacu02g0105 Clacu-Chr2:1144634 1.20E-19 proximal
Clacu05g0009 Clacu-Chr5:317813 Clacu02g0102 Clacu-Chr2:1091435 3.20E-32 transposed
Clacu01g1664 Clacu-Chr1:28770617 Clacu02g0102 Clacu-Chr2:1091435 2.90E-21 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47161 PF03106 WRKY 4.20E-24 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0102 - - - 0.0