Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0119 ATGGCTTCTTCAAATCCCATCTCTCTTCTCACATTTCTCACTTTCCTCTTCCTCCTCTCTTCTTCATCTTCTGCTGTAGTTCCAACCGCAGAGATTTGCCAATCCACCGCCTCCCCGTCCTTCTGCAACTCTTTCCTTCCCAACTCCGCGGCCTCGGTCCACTCCCATTGTCGCTTCACTCTCCGCAATGCCCTCGACCATGCACATGCCTTCTTGGCACTCGTCGACTCTCACCTCAGCCTTTTCCCCTCCCTCTCCGCCCTCCACGACTGCCGTGGCCTCGCGGAAGCCAACCTCGACTTTATATCCCAAACTTTTTCCATAGTCAACTCCACAGCCATGGTCCTTCCTTATTACCAAGCCCATGAGATGGTGTCCTTAATGAGTGCAATGATCACCAATGAAGACACTTGTTATGACGGGTTGACGGGTTTAGGCTCGGCCTTGGGCTTGGTTGATAAGGTGTTGGAGGCCATCTCTTTTGATAGAAAGCTATATAGTTTGTACCTTTCGTTGTTCAAAATGGGTTGGGTTTCTGAGGACATGAAGGCTCCTATGTTGCCAAATATGAACCATTTTGGGGTCGGGAAAGGGCAGTTGAAGCTTAAAATGTCGCCCAAAGACCGAGCGTATTATGAGCGCTTGGTGCATAGGAAGAAGCCGGCGGCCGCTAGAAGGCTTCTTCAGACCAATTACCAAGATGATGGAATTTTAATCAATGGCATGGTTGCGGTGGATCAAAATGGAGCATACGATTTTACAACCATCAGCGACGCCATTGCGGCCGCTCCGAACAAGTCAGCTGTCGCTGACGGATACTTCTTGATCTTCGTGACCGCTGGGATTTACAATGAGAGTGTGTTGGTCCCAAAATATAAAAGGTATGTGTTGATGATGGGAGAAGGTAACAACCAAACTATCATCACCGGCAACAAAAACGTCATTGATGGTTCCACCACTTTCAATAGCGCAACCGTTGCCGTGGAGGGAATAGGGTTTTTCGGAGTAAACCTAACGATCAGCAACACGGCTGGGGCCGCCAAACACCAAGCGGTGGCATTGCGAGTAAGTGCCGACAATGTGACATTATATAGTTGCATATTCGAAGGCTATCAAGACACTCTCTACACACACTCCCTCCGTCAATTCTATAGAGAATGTGATATCTATGGTACTGTCGATTTCATCTTTGGCAATGCTGCCGTCGTTTTGCAAAACTGCAACATCTACGCCCGTCTCCCAATGAGTGGCCAGTTCAACGCCCTCACGGCGCAGGGCCGAACCGACCCCAATCAGAACACCGGAACCTCCATCCACAACTGCACCATCAAGCCGACGTCGGAGCTCGCGGCAAGCCCCGCCACGAAGAGCTACTTAGGGCGGCCGTGGAAGGAATATTCTCGGACAATTTATATGCAATCGTTTATTGATTCCTTTATTGATCCTGCAGGCTGGAAGGAGTGGGACGGCACTTTGAATTTAAACACTTCTTATTACGCCGAGTTTAATAACTCGGGGCCAGGCTCCGACACTTCACGGCGGGCTTCGTGGGTGGTCGGTGTCATCAACGCCACTGTTGCTAGTAACTTCACAGTGTCTCAATTCTTAGCTGGGGATCAATGGCTACCGCCTACCGCCGTGCCCTACACCGGTGGTTTGATATCATAA 1668 50.06 MASSNPISLLTFLTFLFLLSSSSSAVVPTAEICQSTASPSFCNSFLPNSAASVHSHCRFTLRNALDHAHAFLALVDSHLSLFPSLSALHDCRGLAEANLDFISQTFSIVNSTAMVLPYYQAHEMVSLMSAMITNEDTCYDGLTGLGSALGLVDKVLEAISFDRKLYSLYLSLFKMGWVSEDMKAPMLPNMNHFGVGKGQLKLKMSPKDRAYYERLVHRKKPAAARRLLQTNYQDDGILINGMVAVDQNGAYDFTTISDAIAAAPNKSAVADGYFLIFVTAGIYNESVLVPKYKRYVLMMGEGNNQTIITGNKNVIDGSTTFNSATVAVEGIGFFGVNLTISNTAGAAKHQAVALRVSADNVTLYSCIFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYARLPMSGQFNALTAQGRTDPNQNTGTSIHNCTIKPTSELAASPATKSYLGRPWKEYSRTIYMQSFIDSFIDPAGWKEWDGTLNLNTSYYAEFNNSGPGSDTSRRASWVVGVINATVASNFTVSQFLAGDQWLPPTAVPYTGGLIS 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1276120 1279582 + ClG42_02g0011900.10 Clacu02g0119 242187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0119 555 Pfam Plant invertase/pectin methylesterase inhibitor 31 167 IPR006501 GO:0004857(InterPro)
Clacu02g0119 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 175 IPR035513 -
Clacu02g0119 555 CDD PMEI-like_3 32 177 - -
Clacu02g0119 555 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Clacu02g0119 555 Gene3D - 241 555 IPR012334 -
Clacu02g0119 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 175 IPR035513 -
Clacu02g0119 555 PANTHER PECTINESTERASE 13 544 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu02g0119 555 SUPERFAMILY Pectin lyase-like 240 552 IPR011050 -
Clacu02g0119 555 Pfam Pectinesterase 243 539 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu02g0119 555 SMART PMEI_2 22 172 IPR006501 GO:0004857(InterPro)
Clacu02g0119 555 FunFam Pectinesterase 238 553 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0119 Clacu-Chr2:1276120 Clacu11g1635 Clacu-Chr11:27504948 7.30E-150 dispersed
Clacu02g0119 Clacu-Chr2:1276120 Clacu09g0554 Clacu-Chr9:4716330 3.50E-160 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0119 K01051 - csv:101216984 942.954