Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0125 ATGGTCGAACATGATAGACCCATCAAGCCATCTCGTCGACCCAACTCCCAGAATCTGTTAAGAGTTGTAGCAATTCAGATAGAAAGGAAACCAGTGGAAGAGAAAAATGGCCAAATGCTTTGTTTTGAATTTAACTTTGGACTGAACTTCAAGAATCAAACTGATTGTGAGAGACAGTGTGAATCAGAGGAGGATGATGATGCTCTTTTGAAGCCAAGAAAGAAAATGGGTGGTTGTGTCTCTACAAGCAGCCATAGTACATGCAGTAGCCAAAGCAATGGGGAAGCAATTTCTTCTTCATGTATGGGAATTGGATTTCGAGGTCGAAAGCGAACGAAAAGAACATTCTCCGACCATGTTTATGCTCTTCAGAATCTTCCTTCAGCTCCCAACAGGATATTCATGAATGGAAAAAGTCGTTCTTCTTGTATTTTCACGCAACAGGGTCGCAAGGGCATAAACCAGGACGCCATGGTTGTGTGGGAAGATTTCATGTCGGAGGACACGATCTTTTGTGGTGTATTCGATGGACATGGACCTTACGGTCATCTCGTTGCTCGAAAAGTGAGGGATACATTGCCTATAAAGTTGCTGTCATTCTTCCAGTCTCCTCAGTTGAAGCAAAATGACTCTGGTAAAACCTGTTTCCAGAGGAATTTGAAGACACCTCCAGATTGTGAAGATTCTGAGAAAGATGGTTTTGTAGAGGACTCGCAGAATTCGGTATGGAGAGATGCTTTTTTGAACTCGTATAAAGCTATGGATAAGGAGTTGAGATCACACCCTAATCTGGACTGCTTTTGTAGTGGTAGTACTGCAGTCACCATAGTTAAACAGGGGTCAAATCTCTTCATGGGGTATATAGGCGACTCAAGAGCAATCCTTGCCTCGAAGGACGCCAATGATTCCACAGTGGCCGTCCAATTGACCGTGGATCTTAAGCCAGATTTACCAAGAGAAGCTGAAAGAATAAAGCGGTGTAAAGGTAGGGTCTTTGCATTGCAGGATGAGCCTGAAGTGCCAAGGGTGTGGTTACCTTTCGATGATGCGCCCGGTTTAGCAATGGCTCGAGCATTTGGCGACTTCTGTTTGAAAGAATATGGAGTTATCTCTATACCCGAATTCTCTCATCGAACCCTCACCGACGCTGATCAGTTCATCGTTCTTGCATCAGATGGGGTATGGGATGTGTTGAGCAATGAAGAGGTGGTTGACATAGTGTCCTCAGCCCCAACCCGGGCATCAGCTGCAAGGTCCGTGGTGGACTCGGCTGCTCGTGAATGGAAACTCAAATACCCTACCTCAAAAATGGATGATTGTGCTGTCGTCTGCTTATTTTTGGACAGGAGGATGGACTCTGAATCTGACTGTGACGAACAAGGCTTCTCATCTGCAACATTGCGTAGTAATCATTCGGGTACTGCTATCGAGTCCGATGATGGCCAGAGGTCTGAGCCATGTTTGCAAAGGAATAACACTGTCAGATCATCCGAAGAAGGCAAGGGATTACCTGTCGAAGACAGGGAGGTTGGTGCTGCTGTACCTGCAGAAGATCAAAACTGGTTGGGTTTGGAAGGAGTCACTCGAGTGAACTCACTTGTTCAACTTCCTAGATTTTCCGAGGAAAGGCCAGTGTCATAG 1641 45.52 MVEHDRPIKPSRRPNSQNLLRVVAIQIERKPVEEKNGQMLCFEFNFGLNFKNQTDCERQCESEEDDDALLKPRKKMGGCVSTSSHSTCSSQSNGEAISSSCMGIGFRGRKRTKRTFSDHVYALQNLPSAPNRIFMNGKSRSSCIFTQQGRKGINQDAMVVWEDFMSEDTIFCGVFDGHGPYGHLVARKVRDTLPIKLLSFFQSPQLKQNDSGKTCFQRNLKTPPDCEDSEKDGFVEDSQNSVWRDAFLNSYKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMGYIGDSRAILASKDANDSTVAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRTLTDADQFIVLASDGVWDVLSNEEVVDIVSSAPTRASAARSVVDSAAREWKLKYPTSKMDDCAVVCLFLDRRMDSESDCDEQGFSSATLRSNHSGTAIESDDGQRSEPCLQRNNTVRSSEEGKGLPVEDREVGAAVPAEDQNWLGLEGVTRVNSLVQLPRFSEERPVS 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1330347 1334559 + ClG42_02g0012500.10 Clacu02g0125 242193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0125 546 PANTHER PROTEIN PHOSPHATASE 124 446 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Clacu02g0125 546 MobiDBLite consensus disorder prediction 458 498 - -
Clacu02g0125 546 SMART PP2C_4 130 445 IPR001932 -
Clacu02g0125 546 CDD PP2Cc 140 447 IPR001932 -
Clacu02g0125 546 FunFam probable protein phosphatase 2C 52 132 450 - -
Clacu02g0125 546 MobiDBLite consensus disorder prediction 458 518 - -
Clacu02g0125 546 ProSiteProfiles PPM-type phosphatase domain profile. 141 447 IPR001932 -
Clacu02g0125 546 Pfam Protein phosphatase 2C 242 424 IPR001932 -
Clacu02g0125 546 Gene3D - 132 450 IPR036457 -
Clacu02g0125 546 SUPERFAMILY PP2C-like 131 448 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0125 Clacu-Chr2:1330347 Clacu02g1564 Clacu-Chr2:29032715 6.20E-85 dispersed
Clacu03g1036 Clacu-Chr3:18360288 Clacu02g0125 Clacu-Chr2:1330347 8.10E-106 transposed
Clacu04g0720 Clacu-Chr4:21408872 Clacu02g0125 Clacu-Chr2:1330347 3.30E-92 transposed
Clacu08g0598 Clacu-Chr8:13261460 Clacu02g0125 Clacu-Chr2:1330347 4.80E-108 transposed
Clacu10g0354 Clacu-Chr10:4496676 Clacu02g0125 Clacu-Chr2:1330347 1.10E-115 transposed
Clacu11g1155 Clacu-Chr11:16443496 Clacu02g0125 Clacu-Chr2:1330347 1.90E-112 transposed
Clacu02g0125 Clacu-Chr2:1330347 Clacu02g1780 Clacu-Chr2:31315503 1.30E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0125 - - - 0.0