Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0132 ATGGGTTGGAAGAGATCTTCGAGGAACGGCAATTTGAGGATCTGGGTGCAGGTTTTAGTCGGATTCGTGATCTGCGCAGCCCAAGTTCTTTTCGGAATTACGAATCCAGGGGATTTTTCTGCTATTAGTAGCTTACATACCGCACTGGGACTTCCCAGTCTTCCTGGATGGGGCATCGGGCAAGACCCATGCGGAGACGCATGGCAGGGTGTTGTGTGTAATGATTCGAGCATCATTAAAATAATCATTAATGCTGCTAATTTGGGAGGTGAACTTGGTGACAACTTGGGATTGTTTTCTTCGATTCAAACAATTGATTTAAGCAACAATCATATAGGGGGAAGTATACCATCCAGTTTACCTGTTACCATGCAGAACTTTTTTCTTTCAGCTAATGAGTTCACGGGAAGTATTCCGAGTTCATTATCATCTTTGATTCAACTGACAGCGATGTCGTTGAATGATAACAAATTAAGTGGACAAATACCAGATTCCTTTGAAGCCATTTCTCAATTGGTCAATTTAGACTTGTCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGTAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAACAATCAGCTGTCGGGGACCCTTGATGTTCTACAAGACCTTCCACTGAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGAAGGTGCTGAGTATCCCTAATTTTAGAAAGGATGGAAATCCATTTAATTCTTCTGTTTCGCCGACATCTCCTCCTGTATCTCCTTCTCCACCATCAAAGCCAGCACCAGCACCGCCAGTTTCTGGAGCATCACCAGTTTCTGGAGCACCACCATCTTCTCAACAAAAACCTAAGAAACAGGCTGATGGACCATCGGCACCAGAGGAATCCAGTTCTGGAAAAAATAAGAAAAGCACTAAAAGGGTTGTTTTAATAACAATTGCAGTGGTTTTGTCATTCATAATTTTGGTCTTGGCATGTGTGCTCTTTATGCCAAGGTGCAGAAGAAGAAGAGTTGATAGTGTATCCAAGCGACATCAGATAGGTGCTTATAGAGGTGAGAGAGAGAATGCTGGAAATCAGGGAGCCATGCCCCATACAAATGATCAGATTCCTAAAGTTCCAAAAGAGCCAGTTGTAAGGCCGAAGCAGGAAACTCAAACAGAGGTTCAGAAGGTTCCAAAAGATCATGAAGAGAGAAAGAAAAACATGCCAAGAATGAGCGCTATTCCAAAGAAGGATCATCATGAAGTAGATATGAGCGCACTCGATGTCTATCTAATGCCTCCCCCTCCCCCACCACCTCCCCCTCCTCCTCCCCCTCCCCCTCCCCCTCCCCCTCCTGTTGAAGAGGTCACTGCCGTGCCCATTGTTCCAGCCGAAGTTCCTCCCTTGAAGCCTCTCACTAAACATAGAATTACCTCAACTTTTGCAAAATCTTTTACCATTGCGTCCCTTCAGCAATATACAAACAGCTTTTCACAAGAGAATCTTCTAGGAGAAGGAATGCTGGGGAGTGTTTATAGGGCACAGCTTCCCAGTGGGAAGTTACTGGCCGTCAAGAAACTGGATAAGAGAGCATTCAGTCAGCAAAAGGATGATGAATTTCTTGAGTTAGTGAATAATATCGATAGAATCAGGCATGCTAATGTGGTCGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGTAGTGGTGGAACATTGCAGGATGCACTGCACTCAGATGAAGAGTTCAGAAAGAAACTTTCGTGGAATGCCCGCATTAGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGTCAGCCTCCTGTTATTCATAGGAATTTCAAGTCTGCGAATGTCCTACTTGATGATGATCTTTCAGTGCGTGTTTCAGATTGTGGGCTGGCTCCATTAATATCAAAAGGAGCTGTTAGTCAGCTATCTGGTCAGCTTCTGACAGCATATGGTTACGGAGCGCCAGAATTTGAATCAGGAGTTTATACACTTGAGAGTGACGTTTACAGCTTCGGTGTGGTTATGCTGGAACTTCTAACTGGCCGGATGTCTTATGACAGAACAAGGACCCGAGGTGAGCAGTTCCTAGTCAGGTGGGCGATTCCACAGCTTCACGACATAGAGGCATTGACAAGCATGGTTGATCCTTCACTCAATGGTCAATACCCTGCCAAATCCTTATCGTACTTTGCCGATATCATATCAAAATGTGTTCAGTCGGAGCCTGAATTCCGGCCACCAATGTCGTCGGTTGTTCAGGACTTGCTCAACATGATAAGGAGAGAACCACTTGGCAGTGGTTCAAAAGACGATGCGAAGATCTTCGAGCATCCAATGGTAACATGCTCAAGTTTTGCAAACCGAACTTGCCAGCCATTCGTCTTCTTCCTTTTGGTTTGTCTAAAGAGAACACTTTCTAGCAACAGAGCTCCAATTCTTGTGGCAGGTTCTCAGAGGTTCATCAACTTGCTTGCACAAACTCAGCCATGTCTTTGA 2553 44.81 MGWKRSSRNGNLRIWVQVLVGFVICAAQVLFGITNPGDFSAISSLHTALGLPSLPGWGIGQDPCGDAWQGVVCNDSSIIKIIINAANLGGELGDNLGLFSSIQTIDLSNNHIGGSIPSSLPVTMQNFFLSANEFTGSIPSSLSSLIQLTAMSLNDNKLSGQIPDSFEAISQLVNLDLSNNNLSGPLPPSVSNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKVLSIPNFRKDGNPFNSSVSPTSPPVSPSPPSKPAPAPPVSGASPVSGAPPSSQQKPKKQADGPSAPEESSSGKNKKSTKRVVLITIAVVLSFIILVLACVLFMPRCRRRRVDSVSKRHQIGAYRGERENAGNQGAMPHTNDQIPKVPKEPVVRPKQETQTEVQKVPKDHEERKKNMPRMSAIPKKDHHEVDMSALDVYLMPPPPPPPPPPPPPPPPPPPPVEEVTAVPIVPAEVPPLKPLTKHRITSTFAKSFTIASLQQYTNSFSQENLLGEGMLGSVYRAQLPSGKLLAVKKLDKRAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSGGTLQDALHSDEEFRKKLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGQYPAKSLSYFADIISKCVQSEPEFRPPMSSVVQDLLNMIRREPLGSGSKDDAKIFEHPMVTCSSFANRTCQPFVFFLLVCLKRTLSSNRAPILVAGSQRFINLLAQTQPCL 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1367315 1375236 + ClG42_02g0013200.10 Clacu02g0132 242200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0132 850 MobiDBLite consensus disorder prediction 358 410 - -
Clacu02g0132 850 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 578 787 - -
Clacu02g0132 850 Pfam Protein tyrosine and serine/threonine kinase 503 774 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g0132 850 Gene3D Phosphorylase Kinase; domain 1 471 577 - -
Clacu02g0132 850 MobiDBLite consensus disorder prediction 280 306 - -
Clacu02g0132 850 SUPERFAMILY Protein kinase-like (PK-like) 476 774 IPR011009 -
Clacu02g0132 850 MobiDBLite consensus disorder prediction 433 457 - -
Clacu02g0132 850 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 35 260 - -
Clacu02g0132 850 Pfam Leucine Rich Repeat 101 120 IPR001611 GO:0005515(InterPro)
Clacu02g0132 850 Pfam Leucine Rich Repeat 148 167 IPR001611 GO:0005515(InterPro)
Clacu02g0132 850 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515(InterPro)
Clacu02g0132 850 MobiDBLite consensus disorder prediction 432 457 - -
Clacu02g0132 850 SUPERFAMILY Formin homology 2 domain (FH2 domain) 445 455 - -
Clacu02g0132 850 MobiDBLite consensus disorder prediction 247 312 - -
Clacu02g0132 850 MobiDBLite consensus disorder prediction 255 279 - -
Clacu02g0132 850 SUPERFAMILY L domain-like 54 241 - -
Clacu02g0132 850 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 470 577 - -
Clacu02g0132 850 Gene3D Transferase(Phosphotransferase) domain 1 579 783 - -
Clacu02g0132 850 MobiDBLite consensus disorder prediction 383 410 - -
Clacu02g0132 850 ProSiteProfiles Protein kinase domain profile. 500 799 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0132 850 PANTHER LEUCINE RICH REPEAT KINASE 2 76 776 IPR051420 -
Clacu02g0132 850 Gene3D Ribonuclease Inhibitor 39 256 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0132 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0132 Clacu-Chr2:1367315 Clacu08g0628 Clacu-Chr8:14696926 1.00E-102 dispersed
Clacu01g2355 Clacu-Chr1:34302513 Clacu02g0132 Clacu-Chr2:1367315 3.60E-145 wgd
Clacu10g2251 Clacu-Chr10:35413049 Clacu02g0132 Clacu-Chr2:1367315 7.20E-56 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu02g0132 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.5e-205 711.1
Clacu01g2355 . 17 731 Strubbelig Receptor Gene Family AT4G03390 54.1 1.6e-155 547.0
Clacu09g0150 . 484 778 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Clacu10g1722 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Clacu08g0628 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Clacu09g0150 . 115 781 Strubbelig Receptor Gene Family AT1G78980 50.1 1.3e-122 437.6
Clacu08g0628 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.5e-148 521.5
Clacu01g0988 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.2 1.3e-84 311.2
Clacu10g1722 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.5 3.8e-186 648.7
Clacu02g0132 . 34 786 Strubbelig Receptor Gene Family AT4G03390 62.5 6.5e-205 711.1
Clacu01g2355 . 17 731 Strubbelig Receptor Gene Family AT4G03390 54.1 1.6e-155 547.0
Clacu09g0150 . 484 778 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Clacu08g0628 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.5e-148 521.5
Clacu08g0628 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.8e-193 672.9
Clacu09g0150 . 115 781 Strubbelig Receptor Gene Family AT1G78980 50.1 1.3e-122 437.6
Clacu09g0150 . 109 803 Strubbelig Receptor Gene Family AT1G53730 61.1 1.7e-183 639.8
Clacu07g1427 . 103 916 Strubbelig Receptor Gene Family AT1G53730 51.0 3.2e-182 635.6
Clacu08g0628 . 20 693 Strubbelig Receptor Gene Family AT1G53730 50.4 1.3e-154 543.9
Clacu01g0988 . 7 689 Strubbelig Receptor Gene Family AT1G53730 50.9 4.4e-147 518.8
Clacu09g0150 . 109 793 Strubbelig Receptor Gene Family AT3G14350 55.5 2.2e-164 576.2
Clacu01g0988 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 4.2e-177 618.2
Clacu07g1427 . 595 923 Strubbelig Receptor Gene Family AT4G22130 63.4 4.7e-120 428.7
Clacu09g0150 . 482 795 Strubbelig Receptor Gene Family AT4G22130 64.6 6.4e-117 418.3
Clacu02g0132 . 485 796 Strubbelig Receptor Gene Family AT4G22130 58.8 6.0e-107 385.2
Clacu08g0628 . 360 707 Strubbelig Receptor Gene Family AT4G22130 52.4 1.2e-99 360.9
Clacu10g1722 . 387 709 Strubbelig Receptor Gene Family AT4G22130 51.7 9.2e-92 334.7
Clacu01g2355 . 464 731 Strubbelig Receptor Gene Family AT4G22130 60.0 1.3e-90 330.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73308 PF07714 PK_Tyr_Ser-Thr 1.70E-42 CL0016 Clacu PK