Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0138 ATGACAATTTTTTCCTTCTTCACTAGAGCTTCGAGAGCTTTTCATGGCTCCCCTGCATATTCAAAGCTTCTACTCATCAGCACCCTAAGTAGCGGAGGTCTATTGGCATATGCAGATTCACAATCAGACGTTGACAGTCCTATTGAAGAGTGCCGAAAAAAGAGAATTCTAGTGCTTGGAACAGGATGGGCCGGTACCAGTTTCCTCAAGGATCTGGATGCTTCAAAATATGATGTTCAGGTTGTTTCGCCTCAAAATTATTTCTCATTTACTCCTTTATTGCCTAGTGTTACATGTGGATCAGTTGAAGCACGAAGCATTGTTGAACCAGTTCGAAACATCGTGAAGAAGAGAAAAGGTGAAATTAAATTCTGGGAAGCTGAATGCATTAGGATTGATGCTGCTGACAAGAAGGTTTTCTGCCGGTCTAATGTTGACAACAACTTGGTTGGAAATAGGGAGTTTGCCTTAGAATATGACTATTTGATAATAGCAATGGGAGCGCAAGTTAATACTTTTAATACTCCTGGTGTGAAGGAGAACTGCCATTTTCTCAAGGAAGTGGAAGATGCTCAGAAGATCCGCAGAAGTGTGATAGATTGCTTTGAAATGGCGGTGATTCCTAGTCTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGGGTTGAATTTGCTGCAGAGCTTCATGACTTTTTTGAAGAAGATTTAGTAAACTTATATCCTTCGGTTAAAGATCTGGTGAAAATTTCAGTAATTCAATCCGGAGATCACATCTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCCGAGCAAAAATTCCTAAGGGACGGTATCGATGTGTACACAGGATGTCGAGTTGTCAGTGTATCTGATAAAGAAATTAAGATGAAGGTGAAATCAACTGGAGAACTTTGTTCAATGCCGCATGGACTAATTGTGTGGTCTACGGGCATTATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAGATTGGCCAGGGTAGTAGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGCGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGTAAAATTATGGAAGATATCGCCGCCATATTTAAAGCCGCAGACAAAGATAACTCTGGAACCCTGACAGTTACAGAATTTCAAGATGTTCTAGATGATATCATCATAAGGTATCCTCAAGTAGAAATATATTTGAGGAGCAAACATCTACGCGATGTAAAAGATCTATTAAAAGATTCTCAGGGACATGAGAACGAAATAGATATTGAAGGATTTAAGTCAGCTCTTTCTCATGCTGACACGCAGATGAAAAGTCTGCCTGCTACTGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTTGCAGGTGCTTCAACCGCAGGGAGCATTGCACTGAGAATCCTGAAGGCCCTCGACGTTTTAAGAGTTCTGGACGTCATCAGTTTCTTCCGTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGGGGAGAACAAGCAGCTGCAGAACTCCCTGGAGATTGGGTTTCCATGGGTCACAGCACTCAATGGCTATGGTATTCTCAAGCAAGTCAGCTGGCGCACAAGGTATCTAGTGGTATCAGATTGGACAAGGAAGTTCATATTTGGAAGAGACTCAAGCCGCATCTGAAGCTAAACTCAGCGTATCTTCAAGTTGATTCGTTCAATAAATATACGTTCGACAAATGTGCTCTTGAAAATAGCTTCAGATATTGTGATCTAATTAGTGCAGGTTTGTCTGATTCGACACTTGAACTCTCTAAGCTCTCAGAAATGGAACAAGGGAGGCCGGCTTTCACCGTCGATCTTCTGGAGAGGTATGCGGCCAAAGGGAGGGGAGTCATCAGCTGCATGGCTGCTGGAAATGATGTCATTTTGTTAGGCACCAGCAAAGGTTGGGTCACCCGCTATGACTTCGGAGTTGGAGATTCGATCGACTTTGATCTTTCTGTGGGTCGGCCTGGAGAACAATCAATCCACAGAGTATTTGTTGATCCAGGAGGTAGTCATTGTATCACGACAATTGTTGGTACTGGTGGTGCTGATACCTTTTATATGCACGCCAAGTGGTCTAAACCTCGAGTTTTAACCAGATTGAAAGGTCTTGTTGTAAATACTGTTGCCTGGAATAGGCAACATATAACTGAAGCTTCTACAAAGGAGGTCATTCTTGGTACTGACAATGGACAACTATTTGAACTTGCGGTGGATGAGAAGGAAAAGAAGGAAAAGTATGTAAAGTTTCTTTTTGAATTATCAGAACTTCCAGAAGCTTTTATGGACTTGCAGATGGAAACAACTAGCATACTAAATGGAATGAAATATTATGTAATGGCTGTTACTCCAACACGACTGTACTCTTTTACTGGAATAGGATCATTGGAGACTGTCTTCTCTACTTATTTAGAACGTGCAGTGCATTTCATGGAACTTCCTGGCGAAATACCAAATAGTGAACTGCATTTCTACATAAAGCAAAGAAGAGCAATACATTTTGCATGGCTTTCTGGAGCTGGCATTTATCATGGAGAGTTAAATTTTGGATCACAACGTAGTTCATCAAATGGAGACGAAAATTTTGTTGAAAATAAGGCGCTTTTGGATTATTCAAAGTTGACTGAAAATTCTGGAACTGTTAAACCAAGTTCCATGGCAGTGTCTGAATTTCATTTCTTGCTTCTAATTGGTAACAAGGTTAAGGTTGTAAATAGAATTAGTGAGCAAATCATTGAGGAACTCCAGTTTGATCAGACGTCAGAGGCAATCTCAAGGGGTATCCTTGGATTATGTAGTGATGCCACTGCAGGCCGAGATATGTGGAAGGTTTATCTGGACATGAAAGAGTACACTGCAGCACTAGCCAATTGCCGTGATTCTCTTCAGAGAGATCAAGTTTATCTGGCTCAGGCTGAAGGTGCATTAGCATCAAGGGATTATCTCAGAGCAGCATCTTTCTATGCTAAAATCAACTACATATTATCCTTTGAGGAGATCACTCTGAAATTTATAAGTGCAAGTGAACAAGATGCTTTGAGAACTTTTCTATTGCGGAAGCTTGATAATCTTACCAAGGATGATAAGTGCCAAATAACAATGATTTCCACATGGGCAACTGAGTTGTATTTGGATAAGATAAATCGCCTACTCTTGGATGATGACACTGCATCTGATGGGCAAAGTACGGAGTACCAATCTATCATTAAAGAATTTCGTGCTTTTCTCAGTGATTGCAAAGATGTATTGGATGAAGTCACTACAATGAAACTCTTAGAAAGTTATGGTCGGGTTGAGGAATTAGTGTTTTTTGCCGGTCTAAAGGAGCAGTATGAAATTGTCGTCCACCATTATATTCAGCAAGGAGAAGCAAAAAAAGCATTGGAAGTGCTTCAGAAACCTGGAGTGCCTGCTGAACTTCAGTACAAGTTTGCTCCAGAGCTCATTATGCTTGATGCATATGAAACAGTCGAGTCATGGATGATCACAAACAACCTCAACCCGAGGAAGTTGATTCCTGCGATGATGCGTTACTCGGGGGAACCCCATGCAAAGAATGAAACTCATGAAGTCATCAAATATTTGGAATACTGTGTTCATCGGTTACATAATGAGGATCCTGGAGTTCACAACTTGCTGCTGTCTTTGTATGCCAAGCAGGAAGATGACAGTGCACTTCTACGATTCCTGCAATGCAAGTTTGGAAAAGGGCAGGAAAATGGCCCCGAGTTCTTCTATGATCCAAAATATGCTTTGCGTCTTTGTCTCAAGGAAAAGAGAATGCGAGCCTGCGTTCATATATACAGCATGATGGCCATGCATGAAGAAGCAGTTGCTCTTGCCCTACAGGTTGATACTGAGCTTGCTATGGCTGAAGCTGACAAGGTTGAGGATGATGAAGACTTAAGAAAGAAGCTCTGGCTCATGATCGCCAAGCATGTTATTGAACTGGAAAAAGGAACTAAAAGGGAGAACATAAGAAAGGCAATAGCTTTTCTAAAGGAAACTGATGGACTACTGAAGATTGAGGATATTTTACCCTTCTTTCCAGACTTTGCTCTAATTGATGACTTTAAGGAGGCAATTTGCTCATCATTAGAAGATTACAACAAACAAATTGATCAGCTGAAACAGGAGATGAATGATGCAACTCATGGTGCTGACAATATTAGGAAAGATATCAATGCTCTTGCTCAAAGATACGCTGTAATTGATAGAGATGAAGATTGTGGGGTATGTAAGCGTAAAATATTAACTGTGGGCCGAGACCTCTGGATGGCTTCAAGTTACACATCAGTTGTGCATATGGCCCCATTCTATGTCTTTCCATGTGGGCATGGATTCCATGCTCATTGTTTGATCGCTCATGTTACACGTTGCACGGACGAAGCTCAAGCAGAGTATATACTGGATCTTCAAAAACAAATTACTCTATTGGGTGGTGAGACAAGAAAGGACTTGAATGGAAGCTTTGCTGAAGATTCCATCTCTAGCGTGACTCCTGCAGATAAGCTCCGAACACAGTTGGATGATGCGATAGCCGGTGAATGCCCATTTTGTGGTGAGTTAATGATCCGTGAGATCTCTTTGCCTTTCATTTCATCAGAGGAAGCGCAACAGAGTGGACTTGGATTCCAGGTCCTTTGTGGTGTGTACATAAGCCTTCCCATGTGTTGTTTTGACAGTTCGATTCTTAAGTTATTGAACTCGACATTTTTCTCTGTATCGATTGTATTGTTAAGTTGTATTCATCATTTGAAACTCATAACCTACTACTCATTTGCGAGTCTCTTCAGTAAAACAATGGAATCGGCCAATTGTGGGTTTGTTGTTAATGGAATCTACTCAAATGTTGTGATGACTTAA 4944 41.36 MTIFSFFTRASRAFHGSPAYSKLLLISTLSSGGLLAYADSQSDVDSPIEECRKKRILVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKRKGEIKFWEAECIRIDAADKKVFCRSNVDNNLVGNREFALEYDYLIIAMGAQVNTFNTPGVKENCHFLKEVEDAQKIRRSVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGVEFAAELHDFFEEDLVNLYPSVKDLVKISVIQSGDHILNAFDERISSFAEQKFLRDGIDVYTGCRVVSVSDKEIKMKVKSTGELCSMPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIAAIFKAADKDNSGTLTVTEFQDVLDDIIIRYPQVEIYLRSKHLRDVKDLLKDSQGHENEIDIEGFKSALSHADTQMKSLPATAQVAAQQGAYLCRCFNRREHCTENPEGPRRFKSSGRHQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGHSTQWLWYSQASQLAHKVSSGIRLDKEVHIWKRLKPHLKLNSAYLQVDSFNKYTFDKCALENSFRYCDLISAGLSDSTLELSKLSEMEQGRPAFTVDLLERYAAKGRGVISCMAAGNDVILLGTSKGWVTRYDFGVGDSIDFDLSVGRPGEQSIHRVFVDPGGSHCITTIVGTGGADTFYMHAKWSKPRVLTRLKGLVVNTVAWNRQHITEASTKEVILGTDNGQLFELAVDEKEKKEKYVKFLFELSELPEAFMDLQMETTSILNGMKYYVMAVTPTRLYSFTGIGSLETVFSTYLERAVHFMELPGEIPNSELHFYIKQRRAIHFAWLSGAGIYHGELNFGSQRSSSNGDENFVENKALLDYSKLTENSGTVKPSSMAVSEFHFLLLIGNKVKVVNRISEQIIEELQFDQTSEAISRGILGLCSDATAGRDMWKVYLDMKEYTAALANCRDSLQRDQVYLAQAEGALASRDYLRAASFYAKINYILSFEEITLKFISASEQDALRTFLLRKLDNLTKDDKCQITMISTWATELYLDKINRLLLDDDTASDGQSTEYQSIIKEFRAFLSDCKDVLDEVTTMKLLESYGRVEELVFFAGLKEQYEIVVHHYIQQGEAKKALEVLQKPGVPAELQYKFAPELIMLDAYETVESWMITNNLNPRKLIPAMMRYSGEPHAKNETHEVIKYLEYCVHRLHNEDPGVHNLLLSLYAKQEDDSALLRFLQCKFGKGQENGPEFFYDPKYALRLCLKEKRMRACVHIYSMMAMHEEAVALALQVDTELAMAEADKVEDDEDLRKKLWLMIAKHVIELEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLEDYNKQIDQLKQEMNDATHGADNIRKDINALAQRYAVIDRDEDCGVCKRKILTVGRDLWMASSYTSVVHMAPFYVFPCGHGFHAHCLIAHVTRCTDEAQAEYILDLQKQITLLGGETRKDLNGSFAEDSISSVTPADKLRTQLDDAIAGECPFCGELMIREISLPFISSEEAQQSGLGFQVLCGVYISLPMCCFDSSILKLLNSTFFSVSIVLLSCIHHLKLITYYSFASLFSKTMESANCGFVVNGIYSNVVMT 1647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1415916 1436891 + ClG42_02g0013800.10 Clacu02g0138 242206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0138 1647 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Clacu02g0138 1647 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
Clacu02g0138 1647 Pfam Region in Clathrin and VPS 1211 1324 IPR000547 GO:0006886(InterPro)|GO:0016192(InterPro)
Clacu02g0138 1647 SUPERFAMILY FAD/NAD(P)-binding domain 219 373 IPR036188 -
Clacu02g0138 1647 Pfam Pep3/Vps18/deep orange beta-propeller domain 632 963 IPR007810 -
Clacu02g0138 1647 Coils Coil 1385 1419 - -
Clacu02g0138 1647 Gene3D - 424 552 - -
Clacu02g0138 1647 Gene3D - 46 395 - -
Clacu02g0138 1647 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509(InterPro)
Clacu02g0138 1647 SMART efh_1 380 408 IPR002048 GO:0005509(InterPro)
Clacu02g0138 1647 PANTHER NADH DEHYDROGENASE 43 544 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Clacu02g0138 1647 SUPERFAMILY RING/U-box 1418 1485 - -
Clacu02g0138 1647 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1185 1349 IPR000547 GO:0006886(InterPro)|GO:0016192(InterPro)
Clacu02g0138 1647 SUPERFAMILY EF-hand 329 456 IPR011992 -
Clacu02g0138 1647 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 380 IPR023753 GO:0016491(InterPro)
Clacu02g0138 1647 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 45 405 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0138 Clacu-Chr2:1415916 Clacu02g2001 Clacu-Chr2:33458305 4.50E-62 dispersed
Clacu05g2383 Clacu-Chr5:32173014 Clacu02g0138 Clacu-Chr2:1415916 6.60E-06 dispersed
Clacu01g2344 Clacu-Chr1:34203347 Clacu02g0138 Clacu-Chr2:1415916 1.20E-58 wgd
Clacu02g0138 Clacu-Chr2:1415916 Clacu02g1766 Clacu-Chr2:31210503 1.30E-213 wgd
Clacu02g0138 Clacu-Chr2:1415916 Clacu03g0554 Clacu-Chr3:5724574 9.00E-220 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0138 K20181 - csv:101222541 1831.99