Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0155 ATGAATTCTTCAGTGAGAGTCAAAAATGGTGTATGTGAAAGCGGAAGGTTGTTGATCATTGGCTATAGAATCGCACCATCTGGACCATCAAAGAACGTGCAATCGACGAAAGTCTTCTATATCTTAGAGTTTAAGAGTTGCATAAGTGATGAGAGAGGGGATACTCTTGTATCGGCAGGATCGAGATTCGAACTCGGATTCTTTAAGCCATATGGCAGCTCTCATAGCAGAAGATACTTGGGAATATGGTATTACAAATCAAATCCAAGTACGGTTGTTTGGGTTGCCAATCGAGACAGCCCACTTGCAGGTTCAGATGGTATCTTTAAGATTGAGGATGATGGCAACCTCAAAGTATATGATGGAAATCAGAATCTGTATTGGTCAACAAACATTGGAAGTTCTGTACTCGATCGAAGGACTCTGAAGTTATTGGATAATGGAAATCTGGTCTTGAGTTATGCAGATCAAGAAGACTTGTCTGAGCACATCCTCTGGCAGAGTTTTGATTACCCAACTGATACATTTCTTCCTGGCATGTTAATGGATGATAACTTGGTGCTGACTTCATGGAAGAGCTATGATGACCCGGCTCGAGGGAACTTCACTTTTCAGCTAGATCAAGACGGAGGTCAATATGTCATTTGGAAAAGATCAGTTAAATTCTGGAAAAGTGGAGTTTCAGGTAAGTTTATTACCACTGATAAGATGCCTGCTGCATTGTTATACCTTTTGTCAAATTTCTCATCGAAAACTGTCCCAAACTTCTCCGTGCCACATCTCACATCATCATTGTATATTGATACAAGGCTAGTATTGAACAGCTCAGGTCAGCTTCATTATCTAAACTGGGAAGATCACAAAGTGTGGTCTCAGATTTGGGTGGAGCCAAGAGATAGATGCAGTGTGTATAATGCGTGTGGAGATTTTGCTAGCTGTAATAGTGAGGGTGGTGTAGCTTGCAAATGCCTGCCTGGTTTTGAACCTACCTCTCCAGGGAGTTGGAATACTGGAGATTATTCAGGTGGATGCATTAGGAAATCACCAATATGCAGTGCCAACGATGACAGTGACACTTTTTTGAGTCTAAAGATGATGAAAGCTGGAAACCCGGACTTCCAGTTTAATGCGAAGGATGACTTTGATTGCAAATTGGAGTGCCTTAACAACTGCCAGTGTCAGGCTTACTCATATTTGGAAGCTAATACGTCAAGGCAGGGTTCTGCTTGTTGGATTTGGTCTGGAGATCTCAACAATCTTCAGGATGAGCTTGATAATGGCCGTGACCTCAATGTTCGAGTAGCAGTTAGAGATCTAGAATCAACTGTTAGAAACTGTGGAACATGTGGGACAAACCTCATTCCTTATCCACTTAGCACAGGACCTAAATGTGGTGACCCCATGTACTTCAATTTTAACTGCAATGTGGCTACTGGCCAGGTAAACTTTGAAGCAGCAGGTGGAACGTACAAGGTTAAATTCATTGATTCAGAAGCGCGGAAATTTTACATTCAAACCAAGGAAGCTGGTGATTGTGGTGATAAAAATTGGATAACCAAAGCCCTTCAGCTGAACCATTCATCTCCTTTCCATGTAACCAGCTGGTGCAACTTTAAGGAGACCAATCCCGAGAATTTTTCTCTGAAAACCAGCAATGAAGTTGAAATCAGTTGGGAGCCTCCGTTAGAGCCAACTTGTTCTTCTACCACGGACTGCAAAGACTGGCCTTATTCAACTTGCAACATGAGTAAAGATGGAAATAAAAGATGCCTTTGCATAGCAGACTTTCATTGGAATGGCTGGAGCTTGAATTGCACTACAGATCACAACAAAGGAAAGGATGGAAGAGGCAAAACGACCTTCTCTGTGATTATTGTTGCAACATCCATTTGTCTTGTCCTTCTGATGATTCTCTCATGTACTGTGTTTTATATTTACTTCTCCAAAACTGGGCTCATTGAAAGACAAGAAAGCAGGGGAAACAGCCAAAAAGATTTAATGCTTCACTTGTACGACAATGAGAGACGTGTCAAAGACCTGATCGAATCGGGTCGATTCAAGGAAGATGATACAAATGGAATAGACATTCCATTTTTTGATTTGGAAACAATTCTAATTGCAACAGAGAACTTCTCAAATGCAAATAAGCTTGGACAAGGAGGCTTTGGGCCAGTTTACAAGGGCAAGTTTCCTAGTGGGCAGGAGATTGCTGTAAAGAGGCTCTCAAGTGGTTCAGGACAAGGCTTTGAGGAGTTTAAGAATGAGGTTTTGTTAATCGCGAAACTTCAGCATCGAAATCTCGTTAGACTTTTGGGCTACTGTGTTGAAGGAGATGAAAAGATGTTGCTTTACGAATATATGCCAAATAAAAGCTTAGACGCCTTTATATTTGATCAAAAGCTGAGTGTGGCATTGGATTGGGACATCCGCTTCAACGTCATTTTGGGAATTGCTCGTGGCCTTCTTTATTTACACCAAGATTCGAGGTTGAGAATTATTCATAGAGATTTGAAGACGAGCAACATTCTTCTAGATGAGGAGATGAATCCCAAAATATCCGACTTTGGCTTGGCGAGGATCTTTGGAGGGAAAGAAACTGCCACAAATACCAAAAGGGTGGTAGGCACTTATGGATACATGTCACCAGAATATGCATTGGATGGCATATTTTCTGTCAAATCTGACGTCTTTAGCTTCGGTGTAGTCGTAATCGAGATCATTAGTGGAAAAAGGAACACGGGATTCTATCACTTGGAGAAAGCTTTGAGTCTTCTAGGCTATGCTTGGGATTTATGGATGAAAGACGAAGGCTTGGATTTAATGGAGCAAACACTGAGGGGGAATTGCAAAAGAGATGAATATTTGAAGTGTTTAAATGTGGGGCTGTTGTGTGTGCAGGAAGATCCATGGGATCGACCCACCATGTCGAATGTGGTCTTCATGCTCGGCAGCGAAACCGCAACTCTTCCATCTCCGAAACCACCAGCTTTCGTCGTACGGCGGTGCCCCTCGAGCAGAGCTTCCTCCTCCACCAAACCAGAAACCTTCTCCCATAATGAGTTGACGGTCACCTTAAAAGATGGTAGATAG 3090 42.23 MNSSVRVKNGVCESGRLLIIGYRIAPSGPSKNVQSTKVFYILEFKSCISDERGDTLVSAGSRFELGFFKPYGSSHSRRYLGIWYYKSNPSTVVWVANRDSPLAGSDGIFKIEDDGNLKVYDGNQNLYWSTNIGSSVLDRRTLKLLDNGNLVLSYADQEDLSEHILWQSFDYPTDTFLPGMLMDDNLVLTSWKSYDDPARGNFTFQLDQDGGQYVIWKRSVKFWKSGVSGKFITTDKMPAALLYLLSNFSSKTVPNFSVPHLTSSLYIDTRLVLNSSGQLHYLNWEDHKVWSQIWVEPRDRCSVYNACGDFASCNSEGGVACKCLPGFEPTSPGSWNTGDYSGGCIRKSPICSANDDSDTFLSLKMMKAGNPDFQFNAKDDFDCKLECLNNCQCQAYSYLEANTSRQGSACWIWSGDLNNLQDELDNGRDLNVRVAVRDLESTVRNCGTCGTNLIPYPLSTGPKCGDPMYFNFNCNVATGQVNFEAAGGTYKVKFIDSEARKFYIQTKEAGDCGDKNWITKALQLNHSSPFHVTSWCNFKETNPENFSLKTSNEVEISWEPPLEPTCSSTTDCKDWPYSTCNMSKDGNKRCLCIADFHWNGWSLNCTTDHNKGKDGRGKTTFSVIIVATSICLVLLMILSCTVFYIYFSKTGLIERQESRGNSQKDLMLHLYDNERRVKDLIESGRFKEDDTNGIDIPFFDLETILIATENFSNANKLGQGGFGPVYKGKFPSGQEIAVKRLSSGSGQGFEEFKNEVLLIAKLQHRNLVRLLGYCVEGDEKMLLYEYMPNKSLDAFIFDQKLSVALDWDIRFNVILGIARGLLYLHQDSRLRIIHRDLKTSNILLDEEMNPKISDFGLARIFGGKETATNTKRVVGTYGYMSPEYALDGIFSVKSDVFSFGVVVIEIISGKRNTGFYHLEKALSLLGYAWDLWMKDEGLDLMEQTLRGNCKRDEYLKCLNVGLLCVQEDPWDRPTMSNVVFMLGSETATLPSPKPPAFVVRRCPSSRASSSTKPETFSHNELTVTLKDGR 1029
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1544760 1549567 - ClG42_02g0015500.10 Clacu02g0155 242223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0155 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g0155 1029 Pfam PAN-like domain 351 419 IPR003609 -
Clacu02g0155 1029 Pfam S-locus glycoprotein domain 223 330 IPR000858 GO:0048544(InterPro)
Clacu02g0155 1029 MobiDBLite consensus disorder prediction 1004 1022 - -
Clacu02g0155 1029 ProSiteProfiles Protein kinase domain profile. 711 989 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0155 1029 CDD PAN_AP_plant 351 435 - -
Clacu02g0155 1029 SMART serkin_6 711 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0155 1029 SUPERFAMILY Protein kinase-like (PK-like) 695 1012 IPR011009 -
Clacu02g0155 1029 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 676 786 - -
Clacu02g0155 1029 SUPERFAMILY alpha-D-mannose-specific plant lectins 92 197 IPR036426 -
Clacu02g0155 1029 MobiDBLite consensus disorder prediction 1004 1029 - -
Clacu02g0155 1029 Pfam Protein tyrosine and serine/threonine kinase 714 979 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g0155 1029 Pfam D-mannose binding lectin 91 188 IPR001480 -
Clacu02g0155 1029 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 35 169 - -
Clacu02g0155 1029 SMART ntp_6 355 434 IPR003609 -
Clacu02g0155 1029 Gene3D Phosphorylase Kinase; domain 1 676 786 - -
Clacu02g0155 1029 ProSiteProfiles Bulb-type lectin domain profile. 41 165 IPR001480 -
Clacu02g0155 1029 ProSiteProfiles PAN/Apple domain profile. 351 435 IPR003609 -
Clacu02g0155 1029 Pfam Domain of unknown function (DUF3403) 984 1029 IPR021820 GO:0004674(InterPro)
Clacu02g0155 1029 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 48 996 - -
Clacu02g0155 1029 SMART blect_4 45 172 IPR001480 -
Clacu02g0155 1029 Gene3D - 48 169 IPR036426 -
Clacu02g0155 1029 CDD STKc_IRAK 717 982 - -
Clacu02g0155 1029 Gene3D Transferase(Phosphotransferase) domain 1 787 989 - -
Clacu02g0155 1029 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 787 990 - -
Clacu02g0155 1029 CDD B_lectin 53 172 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0155 Clacu-Chr2:1544760 Clacu03g0533 Clacu-Chr3:5551384 1.10E-164 dispersed
Clacu02g0151 Clacu-Chr2:1523965 Clacu02g0155 Clacu-Chr2:1544760 3.30E-106 proximal
Clacu02g1167 Clacu-Chr2:23331377 Clacu02g0155 Clacu-Chr2:1544760 6.40E-269 transposed
Clacu04g1168 Clacu-Chr4:25865441 Clacu02g0155 Clacu-Chr2:1544760 1.30E-97 transposed
Clacu01g2319 Clacu-Chr1:34047119 Clacu02g0155 Clacu-Chr2:1544760 3.90E-118 wgd
Clacu10g2236 Clacu-Chr10:35312590 Clacu02g0155 Clacu-Chr2:1544760 3.00E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73310 PF07714 PK_Tyr_Ser-Thr 2.00E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0155 - - - 0.0