Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu02g0182 | ATGATTTTCCTTTATGTGCAACGGGACCTGGTTCAGTACGCCTATTCCACACCATTCGAGGACCTCTTTTCCTCTTATGATGATGTAGACTCATTAGGTTCATTCTCTTTTTTGAGTATGGGCCTTGATCGAGGACTTGCTAGCTCAAGCCAAGCTCAGCTAGAGCTTGACTACTATGGAAAGAGCTGCCCTCGTGCTGAGAAAATCGTCTATGATTACGTTTACAAGAACATTCCCAAGGTTCCTACCTTGGCTTCTGCCTTACTTAGAATGCATTTCCACGACTGCTTCGTTCGGGGTTGTGATGCATCTGTACTCTTGAACTCAACTACGAACAACCAAAGTGAGAAAGTATCTCCACCAAATCTAACACTGAGAGGCTTCGACTTCATTGATAAAATTAAGAAACTTTTGGAAGCTGAATGCCCTGGAGTCGTCTCCTGCGCCGACATTATTTCTTTAGTTGCAAGAGACTCCGTCGTTGCTATCGGCGGTCCATTCTGGAGGGTTCCGACCGGAAGGAGAGATGGTTTGATCTCAAGATCCACAGAAGCTTTGGTGAACATTCCTCCACCGTTTGCCAATTTGTCAACTCTACAACAACAATTCGCTAACAAGGGTCTTGATCTCAAAGACTTGGTTTTGCTTTCAGGAGCGCACACAATTGGGGTATCTCACTGCTCGTCCTTTACGCGGCGGCTCTACAACTTCACCGGCGTGGGAGATCAAGACCCATCACTTGACAGTCAGTACGCCGCAAATCTCAAGGCAAACAAATGCAAAAGCATTAGCGCCAACGGCATTGTGGAAATGGACCCTGGCAGTTTCAAAACCTTCGATCTCAGCTACTACTCCCTTCTTCTGAAGCGCCGAGGGCTGTTCCAGTCCGACGCGGCTCTGACCACCAGCGCAGCCACCAAGGCCTTCGTCACCGACCTGCTCAATGGCTCCGTTCAGAACTTTTTCGCCCAGTTTGGGTTAGCCATGGAGAAGATGGGTCGCATAGGGGTCAAGACTGGGTCCGAGGGTGAGATTCGCAACCACTGCGCTTTTCCCGCCATTGCTTTGCAACGAAGGAAAAATCTAAAGCTGCAAAAAAGAGGAGAAATAAAAACCCCTCATCTCGGTGTTCGTCCAAGCGGTCGGCGTTTTCCTTCAGATAGCTCAGAAAGTTCAGCTCTCGCAATTGACAAGCCATCGAATCTGTTCTATTCTATTATTTTTGCACATTTTCCGATTTTTGGCAATCTTTGTAAGCGAATTTCATCGTCTGAACTACTCCAATTCGGTTCTACATCTATTCTTTCTGATTCGTCGTTGCAAGTACAAACGGCGATTACTGCGACTTCCAATACATACTTCTTCTCTGTTATTGTTCATAAAGGCCACTGTTCTCGCCCAAGTTGCTCCTTTGCTCACGGGAACGCTGAACTCAGACGATTTGCTGGTGGTTCTACCGGTAGACAGGAATATAGAGGAAATGATTTAAGGCATAAGCTTGACAGCAGACATTCTCCCCTGCAGGAAAGGGATTCTAGAGGGCGACATGGACCTCGTGTTGCAGAGTATAGCTCATCTTGGTCACTTGAACGACATAGTGACCGTAAGAGGAGGAAAAAGGAACTTGGGGATCCCCGTCGTGATTATTCTGGAAATTTGAGGATTTCAGATAGAAATGAAGAAGAAGATAGAGAAGGGAAAACCTTGTTTACTTCTAGAGACACTCTTGAGGGGCAGTTAAACAAGATGCAGACAGATATTGAGATGGCTGAGCACCACAAACACCAAGCTGAGGTCTACCTAGACGAGAAAATTCAAGAAGTGGATAGTTTGACTTCTAGAATTCAGGAGCTAGAATCTCAATTACATAAAGAGAGGCAGGAGTGTAGAAGGATCAAATCAAAAATCAAGAAGTTTGTCAAAGCACATAATCGTTACTCAAGGTTGCAAGATGAACTGAAACGATCGCAAGTCCGACTTCAACAGTTGGGAGATCAGCTGGGGCCAGATGTTAATAAAATTGGTGCCAATGAAGAAGACTCAAGTATCAATATTGTGAGCGATGGAGAGGACCCTGGTTATCATACGTCAGGCCCTTTTCATGACCTGCAAAAAGACACTTCTGTAAGCAAGAGGAAGATGCATGCTGTTCAAGATACTGCAGAGAACTCAAATCGAGCTGATTTAAACAAAGGAAATAAAGAGGCAGTGGTGAGAAGGATCTCTCGGTGGAATGCCCATCCTGCTAAATCAGTATATAGCAAAATTGAAGCGGTCGGCAGTGAAATCAGTGATCTGATACCTGCAGCAAATGAAAGCAGGCAGAAGAGGGGAAGGACATCTAGTAGTGTTTCTACTGCGGACAAGGTTAGGGGTCTAGAGTCAGGTGTTGTAGTGCCATTAACCAGCATGGCTGCCCATGCAGTTGATGAGGAAGTTGATATTGACTTGGAAATCAACAATGAAGTGAAAGAACCGAGGGAAAGTACTAAGGAGGCTGCGTCAGGCGGCCTGCCTTTCTTTCCCCCTCCACCACCTCCTCCAATCCGTGAATTCAACCATTCAAGGTATGAGGGTGAAGATCAAAATGTAGATGTGGAGGTGGTTGATGATGAAAGGGAAGGTATGGACGATGCTTAA | 2640 | 45.83 | MIFLYVQRDLVQYAYSTPFEDLFSSYDDVDSLGSFSFLSMGLDRGLASSSQAQLELDYYGKSCPRAEKIVYDYVYKNIPKVPTLASALLRMHFHDCFVRGCDASVLLNSTTNNQSEKVSPPNLTLRGFDFIDKIKKLLEAECPGVVSCADIISLVARDSVVAIGGPFWRVPTGRRDGLISRSTEALVNIPPPFANLSTLQQQFANKGLDLKDLVLLSGAHTIGVSHCSSFTRRLYNFTGVGDQDPSLDSQYAANLKANKCKSISANGIVEMDPGSFKTFDLSYYSLLLKRRGLFQSDAALTTSAATKAFVTDLLNGSVQNFFAQFGLAMEKMGRIGVKTGSEGEIRNHCAFPAIALQRRKNLKLQKRGEIKTPHLGVRPSGRRFPSDSSESSALAIDKPSNLFYSIIFAHFPIFGNLCKRISSSELLQFGSTSILSDSSLQVQTAITATSNTYFFSVIVHKGHCSRPSCSFAHGNAELRRFAGGSTGRQEYRGNDLRHKLDSRHSPLQERDSRGRHGPRVAEYSSSWSLERHSDRKRRKKELGDPRRDYSGNLRISDRNEEEDREGKTLFTSRDTLEGQLNKMQTDIEMAEHHKHQAEVYLDEKIQEVDSLTSRIQELESQLHKERQECRRIKSKIKKFVKAHNRYSRLQDELKRSQVRLQQLGDQLGPDVNKIGANEEDSSINIVSDGEDPGYHTSGPFHDLQKDTSVSKRKMHAVQDTAENSNRADLNKGNKEAVVRRISRWNAHPAKSVYSKIEAVGSEISDLIPAANESRQKRGRTSSSVSTADKVRGLESGVVVPLTSMAAHAVDEEVDIDLEINNEVKEPRESTKEAASGGLPFFPPPPPPPIREFNHSRYEGEDQNVDVEVVDDEREGMDDA | 879 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 1714456 | 1726367 | - | ClG42_02g0018200.10 | Clacu02g0182 | 242250 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu02g0182 | 879 | MobiDBLite | consensus disorder prediction | 491 | 518 | - | - | |
| Clacu02g0182 | 879 | MobiDBLite | consensus disorder prediction | 820 | 879 | - | - | |
| Clacu02g0182 | 879 | FunFam | Peroxidase | 190 | 332 | - | - | |
| Clacu02g0182 | 879 | ProSiteProfiles | Plant heme peroxidase family profile. | 53 | 353 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | SUPERFAMILY | Heme-dependent peroxidases | 53 | 351 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | Pfam | Peroxidase | 74 | 313 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | MobiDBLite | consensus disorder prediction | 864 | 879 | - | - | |
| Clacu02g0182 | 879 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 212 | 222 | IPR019793 | - | |
| Clacu02g0182 | 879 | CDD | secretory_peroxidase | 53 | 351 | IPR033905 | GO:0004601(InterPro)|GO:0042744(InterPro) | |
| Clacu02g0182 | 879 | PRINTS | Haem peroxidase superfamily signature | 164 | 176 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | PRINTS | Haem peroxidase superfamily signature | 146 | 163 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | PRINTS | Haem peroxidase superfamily signature | 272 | 287 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | PRINTS | Haem peroxidase superfamily signature | 212 | 227 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | PRINTS | Haem peroxidase superfamily signature | 85 | 99 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | Coils | Coil | 573 | 593 | - | - | |
| Clacu02g0182 | 879 | FunFam | Peroxidase | 57 | 200 | - | - | |
| Clacu02g0182 | 879 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 | 459 | 877 | IPR045868 | GO:0046872(InterPro) | |
| Clacu02g0182 | 879 | Gene3D | Peroxidase, domain 2 | 190 | 332 | - | - | |
| Clacu02g0182 | 879 | ProSitePatterns | Peroxidases active site signature. | 85 | 96 | IPR019794 | GO:0004601(InterPro) | |
| Clacu02g0182 | 879 | MobiDBLite | consensus disorder prediction | 528 | 567 | - | - | |
| Clacu02g0182 | 879 | MobiDBLite | consensus disorder prediction | 484 | 567 | - | - | |
| Clacu02g0182 | 879 | Gene3D | - | 58 | 350 | - | - | |
| Clacu02g0182 | 879 | Coils | Coil | 601 | 635 | - | - | |
| Clacu02g0182 | 879 | Coils | Coil | 646 | 666 | - | - | |
| Clacu02g0182 | 879 | PRINTS | Plant peroxidase signature | 126 | 139 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | PRINTS | Plant peroxidase signature | 63 | 82 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | PRINTS | Plant peroxidase signature | 164 | 179 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | PRINTS | Plant peroxidase signature | 87 | 107 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | PRINTS | Plant peroxidase signature | 270 | 285 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | PRINTS | Plant peroxidase signature | 145 | 155 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | PRINTS | Plant peroxidase signature | 327 | 340 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | PRINTS | Plant peroxidase signature | 211 | 223 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Clacu02g0182 | 879 | PRINTS | Plant peroxidase signature | 286 | 303 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu02g0182 | Clacu-Chr2:1714456 | Clacu02g0184 | Clacu-Chr2:1736607 | 5.70E-88 | dispersed | |
| Clacu02g0182 | Clacu-Chr2:1714456 | Clacu02g0183 | Clacu-Chr2:1728775 | 4.90E-100 | tandem | |
| Clacu09g1563 | Clacu-Chr9:26397219 | Clacu02g0182 | Clacu-Chr2:1714456 | 7.40E-57 | transposed | |
| Clacu02g0182 | Clacu-Chr2:1714456 | Clacu02g0870 | Clacu-Chr2:10519614 | 1.90E-123 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu02g0182 | K00430 | - | csv:101222960 | 679.863 |