Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0183 ATGCTTGTATCATCTTTTTCGAACATCGTTGGAGCAAAAAAATTGACGGTCGGATTTTATCAGGGTAGCTGCCCGGGGGTGGAGTATATTGTTGCCAAAACAGTAGCTCAATATATTAAGAAACAACCAACTCTTGCTGCTTCTTTGTTGAGAATACACTTCCATGACTGCTTTGTTAGGGGTTGTGATGGTTCTGTGCTATTAAATTCCAAGCCAAACAACCAAGCTGAGAAAGATTCTTTTCCCAACCTTAGTTTAAGAGGTTTTAATGTCGTTGACGCTGTTAAAGCTGCTGTCGAAAAGCAATGCCCCAGTATCGTTTCTTGTGCTGATATTCTCGCTTTGATAGCTCGCGACGCCGTTAGAATGATTGGAGGGCCGCTGTGGGAAGTTCCAACAGGAAGAAGAGATGGAAGAGTATCCATCTCCAGAGAAGTGTTGATCAATTTGCCGCCTCCCTTCGCTAATATCTCTTCTCTCAAAACAAGTTTCCTCTCCAAAGGTCTTTCTGTCAAAGATCTGGTTGTTTTATCCGGATCACACACAATCGGAGTCTCTCACTGCACCTCCTTCTCCAACCGTCTCTACAATTTCACCGGCAAAGGCGACGCCGATCCTAAACTAGACAAATACTACGTCGTTGCACTCAAGAACAAATGCAAGCCAAATGACCAGAAAACCATCGTCGAGATGGATCCTGGAAGCTTCAAGACCTTCGATCAAGGTTACTACACTCTCGTCTCCAAGAGAAGAGGATTGTTCCAGTCCGATTCTGCTCTTCTCGACGATCCTGATACCAAAGCTTACGTACTGCTTCAGGCAAGTACACGTGGCGCTAGTTTCGCCACCGATTTCGCTAAATCCATGGTGAATATGGGGAATATCGGTGTCCTCACCGGCACCGACGGTGAAATTAGGCGGCGATGTGCTTTTGTTAATTGA 942 45.33 MLVSSFSNIVGAKKLTVGFYQGSCPGVEYIVAKTVAQYIKKQPTLAASLLRIHFHDCFVRGCDGSVLLNSKPNNQAEKDSFPNLSLRGFNVVDAVKAAVEKQCPSIVSCADILALIARDAVRMIGGPLWEVPTGRRDGRVSISREVLINLPPPFANISSLKTSFLSKGLSVKDLVVLSGSHTIGVSHCTSFSNRLYNFTGKGDADPKLDKYYVVALKNKCKPNDQKTIVEMDPGSFKTFDQGYYTLVSKRRGLFQSDSALLDDPDTKAYVLLQASTRGASFATDFAKSMVNMGNIGVLTGTDGEIRRRCAFVN 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1728775 1731265 - ClG42_02g0018300.10 Clacu02g0183 242251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0183 313 CDD secretory_peroxidase 14 312 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Clacu02g0183 313 FunFam Peroxidase 151 292 - -
Clacu02g0183 313 Gene3D Peroxidase, domain 2 151 292 - -
Clacu02g0183 313 FunFam Peroxidase 18 161 - -
Clacu02g0183 313 ProSiteProfiles Plant heme peroxidase family profile. 14 313 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 PRINTS Plant peroxidase signature 106 116 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 PRINTS Plant peroxidase signature 246 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 PRINTS Plant peroxidase signature 287 300 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 PRINTS Plant peroxidase signature 48 68 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 PRINTS Plant peroxidase signature 172 184 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 PRINTS Plant peroxidase signature 230 245 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 PRINTS Plant peroxidase signature 87 100 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 PRINTS Plant peroxidase signature 24 43 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 PRINTS Plant peroxidase signature 125 140 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 Gene3D - 18 313 - -
Clacu02g0183 313 PRINTS Haem peroxidase superfamily signature 232 247 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 PRINTS Haem peroxidase superfamily signature 125 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 PRINTS Haem peroxidase superfamily signature 107 124 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 PRINTS Haem peroxidase superfamily signature 46 60 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 PRINTS Haem peroxidase superfamily signature 173 188 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 ProSitePatterns Peroxidases proximal heme-ligand signature. 173 183 IPR019793 -
Clacu02g0183 313 SUPERFAMILY Heme-dependent peroxidases 15 313 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 PANTHER PEROXIDASE 25-RELATED 16 309 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Clacu02g0183 313 Pfam Peroxidase 31 273 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Clacu02g0183 313 ProSitePatterns Peroxidases active site signature. 46 57 IPR019794 GO:0004601(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0183 Clacu-Chr2:1728775 Clacu02g0870 Clacu-Chr2:10519614 1.50E-91 dispersed
Clacu02g0182 Clacu-Chr2:1714456 Clacu02g0183 Clacu-Chr2:1728775 4.90E-100 tandem
Clacu02g0183 Clacu-Chr2:1728775 Clacu02g0184 Clacu-Chr2:1736607 2.30E-148 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0183 K00430 - csv:101219177 551.592