Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0187 ATGAGCCGTCGGATCAACTACGAGATTTTATCTGCACCGTCTGTTCGTCTCCGGATTCACATCTTTTTCTCCCGATTTGAGCACAACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCTGGGGCAAAAGAATACGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAGTTCAGTTATAACAAGATACTCAAGGATCTGAAGAAGGAATTCTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAGAACATCAAGATTCACGACCAAGTTATGGATCATTGGACCTTTTTAATTAATGATGATGCATTTCCTGCTTTCTCATCCCGATTGCGACATCTAACACATCATTTTATCGAATATGGTCCTGTATCTGCCCTTTGGTTTTACGCTCTTCGTCTCCGGATTCACACCTTTTTCTCTTGGGTTAGGGTTTCTCTTTTGTGCTTGCTTGTATTGTTTTTTCTGTTTCTGGGATCGAACCGCAAGATCCGTTTATTTTCTGGGATTTTTGAGGAGCTGAATTTAAGAGCCCATAATTTATTTGCTGGTTACCTGTGTTCTACTCCGGACAGCCAAGTTTCATACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGAGCAAAAGAGTATGTTCATGTGCGTATACAGCAACGCAACGGGAGAAAAAGTCTGACAACTGTCCAAGGACTGAAGAAGGAATTTAGTTATAACAAGATTCTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAGAGAAAGAATGTATCTACCTTCCTTGTGCAGAGCATTGTTCAACCTTTCGCCCTGCTTTCTCGTCATCGAATTGTATTCTTAGCATTTTTATTCATTCATGAGACTGCTGCATTCGGGCACTATTCCCCAACTCCTGATTGA 1074 43.39 MSRRINYEILSAPSVRLRIHIFFSRFEHNPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHDQVMDHWTFLINDDAFPAFSSRLRHLTHHFIEYGPVSALWFYALRLRIHTFFSWVRVSLLCLLVLFFLFLGSNRKIRLFSGIFEELNLRAHNLFAGYLCSTPDSQVSYPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQSIVQPFALLSRHRIVFLAFLFIHETAAFGHYSPTPD 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1750319 1756936 + ClG42_02g0018700.10 Clacu02g0187 242255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0187 357 FunFam Eukaryotic translation initiation factor SUI1 17 129 - -
Clacu02g0187 357 ProSiteProfiles Translation initiation factor SUI1 family profile. 253 323 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu02g0187 357 ProSiteProfiles Translation initiation factor SUI1 family profile. 47 117 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu02g0187 357 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 29 127 - GO:0003723(PANTHER)
Clacu02g0187 357 NCBIfam translation initiation factor SUI1 233 322 IPR005874 GO:0003743(InterPro)
Clacu02g0187 357 NCBIfam translation initiation factor SUI1 28 127 IPR005874 GO:0003743(InterPro)
Clacu02g0187 357 CDD eIF1_SUI1 251 321 IPR005874 GO:0003743(InterPro)
Clacu02g0187 357 CDD eIF1_SUI1 45 127 IPR005874 GO:0003743(InterPro)
Clacu02g0187 357 Gene3D - 18 128 - -
Clacu02g0187 357 Gene3D - 225 329 - -
Clacu02g0187 357 Pfam Translation initiation factor SUI1 250 321 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu02g0187 357 Pfam Translation initiation factor SUI1 44 118 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu02g0187 357 SUPERFAMILY eIF1-like 30 128 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu02g0187 357 SUPERFAMILY eIF1-like 245 322 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Clacu02g0187 357 FunFam Eukaryotic translation initiation factor SUI1 227 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0187 Clacu-Chr2:1750319 Clacu09g1080 Clacu-Chr9:10254417 2.90E-38 dispersed
Clacu10g0518 Clacu-Chr10:6273653 Clacu02g0187 Clacu-Chr2:1750319 5.60E-39 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0187 K03113 - csv:101219651 198.749