Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0189 ATGCCAGCCGGAATGATGATTCCAGCGAGAAACACGGCGTCGTCGATGATCGGAAGGAACGGAAGTGTTGGGATGTTTGGGTCTCCAGGCAGCCTTGTTCTTGGTCAGGAAATACAAGGTGTGGAAATGGGAGAAAATGAATATGGGAGAATGAGAGAAACAGAAGAATTTGAGAGTGGAACAAAATCAAGTAGCGAGAACCACGAGGTTGGTTCCGGCGACGACCAACTCAACCAACGCCCCAAAAAGAAGCGTTACCACCGCCACACTCAGCATCAGATCCAACAAATGGAAGCGTTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTGAGTAGGGAATTGAATTTAGAGCCATTGCAAGTGAAGTTTTGGTTTCAAAACAAGCGAACTCAGATGAAGACCCATCATGAGCGACATGAAAACACCCAGCTCCGAACAGAAAATGAGAAGCTTAGAGCAGATAATATGAGATATAGAGAAGCTCTTAGTAATGCCACGTGTCCCAATTGTGGAGGTCCGACCGCCATTGGAGAGATGTCCTTTGACGAACATCATCTCAGGCTTGAAAATGCCCGCTTGAGAGAAGAGATCGATCGCATTTCAGCCATAGCAGCAAAATACGTTGGAAAGCCAGTATCAAACTACCCTCTTCTTTCTACTCCAATTCCTTCACGTCCTCTAGAACTTGGAATGGGAGGCTATGGAGGCCACGATTCCGGCGGGGACATGTACGGGGCAGCGGACCTTCTCCGGACCATAAGCGCCCCATCGGAAGCCGACAAGCCGATAATTATCGAGCTTGCAGTTGCAGCCATGGAGGAGCTGGTCCGAATGGCTCAGATGGGTGAGCCTTTGTGGATGACAGGGCTTGATGGCTCAACTGCTGTGCTTAATGAAGAGGAATATGTTAGAAGCTTTCCTAGAGGAATTGGTCCTAAGCCCTCTGGGTTCAGTTGTGAAGCTTCCCGTGCTACTGCTGTTGTCATTATGAATCATATTAGCCTCGTTGAGATGCTCATGGATGTGAATCAATGGTCAACAATATTCAGTGGGATTGTGTCGAGAGCTATGACATTAGAAGTATTATCAACCGGCGTTGCTGGAAACTACAACGGAGCATTACAAGTGATGACATCCGAATTACAAGTGCCTTCACCCCTTGTTCCAACTCGGGAGAGCTATTTCGTGAGGTATTGTAAACAACATGGTGAGGGAACATGGGCTGTGGTGGACGTTTCCTTAGACAATTTACGCCCAGCTCCTGCCCTTAGATGTAGAAGAAGGCCATCCGGCTGCTTAATCCAAGAAATGCCCAATGGCTATTCTAAGGTTACCTGGGTTGAGCATGTTGAGGTGGATGATCGTGGGGTTCACAGTTTATACAACCAGCTAGTTAGGTCCGGCCACGCGTTCGGCGCGAGGCGTTGGATTGCCACGTTGGATCGTCAGTGTGAACGGCTTGCCAGTGCCATGGCCACAAGTATTCCTACTGGTGATGCTGGAGTGATAACAAATCAAGAAGGAAGAAAAAGCATGTTGAAGCTGGCGGAGAGAATGGTGATGAGCTTTTGCGGTGGAGTGAGCGCGTCAACCACACACACTTGGACGACTCTATCGGGAACTGGAGCTGACGACGTTAGAGTTATGACAAGAAAGAGTGTTGACGATCCCGGCAGACCTCCCGGCATTGTCCTCAGCGCCGCCACTTCCTTTTGGCTTCCTCTTCCTCCCGACAGAGTCTTCCATTTTCTCAGAGATGAAAATTCTCGTAATGAGTGGGATATTCTTTCAAATGGTGGAGTTGTTCAAGAAATGGCTCACATTGCCAATGGCCGCGACACGGGCAACTGTGTTTCTTTGCTACGAGTTAACAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAAAGCAGCACAGATCAAACAGCCTCGTTTGTAATCTACGCGCCGGTGGACATTGTGTCCATCAACGTCGTACTAAACGGCGGAGATCCTGATTACGTGGCCCTTCTCCCCTCCGGATTCGCCATTCTTCCCGATGGAACCACTGCGTCCAGCGGCGGCGCTGCCAATGGGGTGGCTGAACATGGGTCCGCCGGGTCGCTTTTAACGGTGGCGTTTCAGATTTTGGTTGACTCGCCTCTTTGTCATGTGATAATCCTTGAACCCCTCACTCTCACCTCAGAAGGAGAAAAATGA 2220 49.14 MPAGMMIPARNTASSMIGRNGSVGMFGSPGSLVLGQEIQGVEMGENEYGRMRETEEFESGTKSSSENHEVGSGDDQLNQRPKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALSNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSNYPLLSTPIPSRPLELGMGGYGGHDSGGDMYGAADLLRTISAPSEADKPIIIELAVAAMEELVRMAQMGEPLWMTGLDGSTAVLNEEEYVRSFPRGIGPKPSGFSCEASRATAVVIMNHISLVEMLMDVNQWSTIFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPALRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYNQLVRSGHAFGARRWIATLDRQCERLASAMATSIPTGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPLPPDRVFHFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESSTDQTASFVIYAPVDIVSINVVLNGGDPDYVALLPSGFAILPDGTTASSGGAANGVAEHGSAGSLLTVAFQILVDSPLCHVIILEPLTLTSEGEK 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1769521 1776458 - ClG42_02g0018900.10 Clacu02g0189 242257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0189 739 MobiDBLite consensus disorder prediction 53 90 - -
Clacu02g0189 739 FunFam Homeobox-leucine zipper protein GLABRA 2 271 490 - -
Clacu02g0189 739 CDD homeodomain 83 141 IPR001356 GO:0003677(InterPro)
Clacu02g0189 739 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 66 720 IPR042160 -
Clacu02g0189 739 SUPERFAMILY Homeodomain-like 67 139 IPR009057 -
Clacu02g0189 739 CDD START_ArGLABRA2_like 266 490 - -
Clacu02g0189 739 Gene3D - 68 157 - -
Clacu02g0189 739 SMART START_1 271 491 IPR002913 GO:0008289(InterPro)
Clacu02g0189 739 Gene3D - 306 486 IPR023393 -
Clacu02g0189 739 FunFam Homeobox-leucine zipper protein HDG1 70 156 - -
Clacu02g0189 739 Coils Coil 146 166 - -
Clacu02g0189 739 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu02g0189 739 SUPERFAMILY Bet v1-like 510 716 - -
Clacu02g0189 739 ProSiteProfiles START domain profile. 262 494 IPR002913 GO:0008289(InterPro)
Clacu02g0189 739 SUPERFAMILY Bet v1-like 264 493 - -
Clacu02g0189 739 SMART HOX_1 81 144 IPR001356 GO:0003677(InterPro)
Clacu02g0189 739 Pfam START domain 272 491 IPR002913 GO:0008289(InterPro)
Clacu02g0189 739 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677(InterPro)
Clacu02g0189 739 Pfam Homeodomain 83 138 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2591 Clacu-Chr1:36186020 Clacu02g0189 Clacu-Chr2:1769521 5.50E-19 dispersed
Clacu02g0189 Clacu-Chr2:1769521 Clacu06g0005 Clacu-Chr6:307312 2.10E-208 dispersed
Clacu01g2287 Clacu-Chr1:33849681 Clacu02g0189 Clacu-Chr2:1769521 1.40E-257 wgd
Clacu02g0189 Clacu-Chr2:1769521 Clacu02g0881 Clacu-Chr2:10808199 0.00E+00 wgd
Clacu02g0189 Clacu-Chr2:1769521 Clacu03g0485 Clacu-Chr3:5170642 2.60E-243 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47173 PF01852 START 1.50E-57 CL0209 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0189 K09338 - csv:101219415 1352.42