Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0192 ATGGTTAATTTTGTTGCTCTGCCGCTGTTGCTATATACTTTGATATGGCTGTTTCAGTTCACCGGTCCGATCTGCTGCCAAAAACCTTCTGTGGTAAACATTGGGGCGGTTTTTACTTTCAATTCCGTCATCGGCAGAGCAGCAAAGCCGGCCATGGAAGCAGCAATCTCCGACATAAACGCCGACCCCAATATCTTGAATGGCATAAAGCTTAACTTCCTCATGGAAGACTCTAATTGTAGTGGCTTCCTGGGCTCCGTTGAAGCTTTGCAGGTACTTGAGAAAGAGATTGTAGCCATGATTGGCCCACAATCCTCAGTAGTGGCTCATGTGATTTCTCAAATTGTTAATGGTTTACAAATTCCTCAAGTATCCTATGCTGCTACTGATCCAACATTATCCACTCTGCAACTCCCTTTCTTCCTCCGAACCACTTTAAGTGACTCTTACCAAATGACTGCCATGGCTGACTTGATTGATTACTATGGCTGGAAAGAAGTCATTGCTATATTTTTGGATGATGATTATGGCAGAAATGGGATATCTTTTCTGGGAGATGAACTTCAGAAGAAAATGTGTCGTATTTCTCATGAATTCCCTTTGTCTTCTATGACTAATCTAACTAAGATCACACAAATACTTAACGATTCTAAATTGCTTGGTCCTCGTGTTTACGTAGTTCATGTAGGCCCTGATCCCCAATTAAGAATCTTCACCATTGCTCATAAACTTGGTATGCTTACAAGCAATTACGTTTGGTTCGCAACCGATTGGCTTTCTACAACTCTTGATTCTTCTTCACCAATAACCAATGGTGCTTCACTTGATATACTTAACGGAGTCGTGGGGTTGCGCCCTCATACTCCAGAGTCTAAACGAAAGAGGGATTTGTGGGATCGGTTGAGCAAAACGCAGCCAAAAGGTTTGACCAATTCTGTGTTGAATGTTTATGGACTGTATGCTTATGATTCAGTATGGGTTGTTGCGAAGGCAGTAGATAAGTTTCTCAAAGAAAATGGGAATATCATAACATTTTCATCCACAGGTAAAGTGTTTGGCTCTAATGGAAGTGGAATTCAATTGGGTAAGCTTAAAGTGTTTGATGGAGGAAGTGATTTACTTAGAATTATTAAGCAAACAGATTACAGAGGTTTAAGTGGGAGAATTCAGTTTGGTGAAGACAGAAATGTTGTAAATGGTAGCTATGATGTGATTAATATTAACCAAAGGGAAATTCGTTTGGTGGGTTATTGGTCTAATGACTCAAGATTTCATTCCCACTTAGATCAAAAACTTGAGAACGTGGTTTGGCCTGGTGGGAAGTCAGAAATACCAAGGGGTTGGGTCATTGCAGATGCTGGAAAGCCTCTGAGAATTGCTTTCCCAAAAAGAGCAAGCTTTGTTGATTTCGTAACTCAATTGAACAACTCCAATATAGTTCGAGGATACGTTATCGATATATTCAAAGAAGCTCTCAAGTTTGTTCCATATGAAGTTCCTTACAAATTTGTGCCTTTTGGGGATGGTAGAGTCAATCCAAGTTATGATGAACTTGTTCAGTCAGTTGCAAATAATGTGTTTGATGGAGCTGTTGGGGACATTGCTATTGTTACGAACCGAACAAAGATTGTCGATTTTTCCCAACCGTATACGACTACGGGGCTTATCATAGTTGCACCAGTTAAAGATTCAAAATCAAGTGCTTGGGTGTTTCTTAAACCATTTACAGTGGAGATGTGGTGTGCAACAGCAGGTTCGTTTGTGGTAATTGGGATTGTTATTTGGATGTTAGAACATCGAATCAACGACCATTTTCGAGGTCCTCCGAAAAGGCAGATTGTCACTATGTGTTTATTCAGCTTTTCAACTCTATTCAAGGCAAATCAAGAAGCAACAATAAGCCCACTTTCTCGACTGGTGATGTTGGTATGGCTGTTCTTATTATTGGTAATAACCTCAAGCTACACAGCAAGTTTGACATCAATCCTTACAATTCAGCAACTTTCTTCTCCAATACGTGGAATTGATGACTTGGTTGCAAGTAATTTGCCAATTGGATATCAAGTAGGATCCTTTGCTTATGACTATCTCACACAAAGCCTTTTCATACCACGTTCCAGACTGGTGAAGCTGGACACCCCTGAAGACTACGAGAAAGCACTGCGCCTTGGCCCAAAAGGAGGAGGTGTGGCAGCCATCATTGATGAACTTCCATATTTGGAGTTGTTTCTGTCTAAGACTAAAGAATTTGGAATGATTGGCCAACCTTTTACAAGGAGTGGATGGGGATTTGCTTTCCAGCGAGGATCTCGACTTGCAGTTGATATGTCAACTGCAATTCTGAGACTCTCGGAGAGCGGGAAACTTCAAGAAATACACGACTTGTGGTTCTGTAAGCTAGGTTGTCCGGGGGATCGGGGAGGAAAGTCAGAGCCAGACCAACTTCAGTTGATCAGTTTCTGGGGTTTGTATTTGCTTTGTGGAATCATTTCCCTTGCTGCACTCTTCCTGTTTCTATTAAGACTAATTCACCAGTATATCCGTTATCAAAGACACCATCAGCGTCGTCGTTCAGAGGAAGTTACACCATTGCCTGTTCCATCGAACACCAGCTGTACTCAGACCATTCAAAACTTTATAGGGTTTATTGACGAGAAGGAAGAAGCCATCAAGAGCTTCTTCCTACATGGTGCTCAAAATGGGAACCAACTCCACAATCATTCCCAAAATGCCAAGGAGAAGGCCGATTCAGAGATACAGCTAGGGACCTCGAGTATGAATCGAGGATAA 2790 41.54 MVNFVALPLLLYTLIWLFQFTGPICCQKPSVVNIGAVFTFNSVIGRAAKPAMEAAISDINADPNILNGIKLNFLMEDSNCSGFLGSVEALQVLEKEIVAMIGPQSSVVAHVISQIVNGLQIPQVSYAATDPTLSTLQLPFFLRTTLSDSYQMTAMADLIDYYGWKEVIAIFLDDDYGRNGISFLGDELQKKMCRISHEFPLSSMTNLTKITQILNDSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLTSNYVWFATDWLSTTLDSSSPITNGASLDILNGVVGLRPHTPESKRKRDLWDRLSKTQPKGLTNSVLNVYGLYAYDSVWVVAKAVDKFLKENGNIITFSSTGKVFGSNGSGIQLGKLKVFDGGSDLLRIIKQTDYRGLSGRIQFGEDRNVVNGSYDVININQREIRLVGYWSNDSRFHSHLDQKLENVVWPGGKSEIPRGWVIADAGKPLRIAFPKRASFVDFVTQLNNSNIVRGYVIDIFKEALKFVPYEVPYKFVPFGDGRVNPSYDELVQSVANNVFDGAVGDIAIVTNRTKIVDFSQPYTTTGLIIVAPVKDSKSSAWVFLKPFTVEMWCATAGSFVVIGIVIWMLEHRINDHFRGPPKRQIVTMCLFSFSTLFKANQEATISPLSRLVMLVWLFLLLVITSSYTASLTSILTIQQLSSPIRGIDDLVASNLPIGYQVGSFAYDYLTQSLFIPRSRLVKLDTPEDYEKALRLGPKGGGVAAIIDELPYLELFLSKTKEFGMIGQPFTRSGWGFAFQRGSRLAVDMSTAILRLSESGKLQEIHDLWFCKLGCPGDRGGKSEPDQLQLISFWGLYLLCGIISLAALFLFLLRLIHQYIRYQRHHQRRRSEEVTPLPVPSNTSCTQTIQNFIGFIDEKEEAIKSFFLHGAQNGNQLHNHSQNAKEKADSEIQLGTSSMNRG 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1798357 1804268 - ClG42_02g0019200.10 Clacu02g0192 242260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0192 929 CDD PBP1_GABAb_receptor_plant 33 424 IPR044440 -
Clacu02g0192 929 Pfam Receptor family ligand binding region 48 408 IPR001828 -
Clacu02g0192 929 Gene3D - 745 804 - -
Clacu02g0192 929 Gene3D - 459 567 - -
Clacu02g0192 929 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 874 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Clacu02g0192 929 SUPERFAMILY Periplasmic binding protein-like I 25 449 IPR028082 -
Clacu02g0192 929 SUPERFAMILY Periplasmic binding protein-like II 435 797 - -
Clacu02g0192 929 Gene3D - 147 422 - -
Clacu02g0192 929 MobiDBLite consensus disorder prediction 904 929 - -
Clacu02g0192 929 Pfam Ligand-gated ion channel 798 829 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Clacu02g0192 929 Gene3D - 568 700 - -
Clacu02g0192 929 FunFam Glutamate receptor 147 306 - -
Clacu02g0192 929 PIRSF IGluLR_plant 1 927 IPR017103 -
Clacu02g0192 929 SMART GluR_14 456 799 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Clacu02g0192 929 FunFam Glutamate receptor 694 801 - -
Clacu02g0192 929 Pfam Bacterial extracellular solute-binding proteins, family 3 470 576 IPR001638 -
Clacu02g0192 929 FunFam Glutamate receptor 568 698 - -
Clacu02g0192 929 MobiDBLite consensus disorder prediction 915 929 - -
Clacu02g0192 929 CDD GluR_Plant 455 797 - -
Clacu02g0192 929 Gene3D - 51 399 - -
Clacu02g0192 929 FunFam Glutamate receptor 452 568 - -
Clacu02g0192 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Clacu02g0192 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 236 259 - -
Clacu02g0192 929 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0192 Clacu-Chr2:1798357 Clacu02g0893 Clacu-Chr2:11050880 0.00E+00 dispersed
Clacu02g0192 Clacu-Chr2:1798357 Clacu02g0891 Clacu-Chr2:10914865 3.80E-244 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0192 K05387 - csv:101203158 1625.53