Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0208 ATGGCCTGGACCCGACGATCCGCCGTCGGAAACGGCTCATCCGCCACCGTCTACCTCGCCTCCATCGCCTCCTCCGGCGAGCTATTCGCCGTCAAGTCCGCCGAGCTTCTCAAATCAGACTTCTTGAAAACAGAGCAGAGGATTCTTTCTTCCCTTTCCCACCCTTCAATTGTGGGCTACAGGGGATTCGATGTAACGACAGAAAATGGGAAGCTAATGTACAATCTCTTCATGGAGTACGTCGCCGGTGGCACTCTTACCGAAGAAATTGTCCGACGCGGCGGCAGGATTAAGGAGGCGGCGGCGGCGTTTTACACGCGTCAAATTGTTAGAGGTTTGGAGTACTTGCACAAACAGGGCTTGGTGCATTGTGATATCAAAGCTAAGAACATTTTAATCGGTGGAGATGGTTTGAAGATTGCTGATTTCGGTTGCTCCAAATGGGTTTCTGAGACGGAGGCGGTAATCAGCGGAACGCCGATGTTCATGGCACCGGAAGTGGCGCGTGGGGAAAAACAGGGGATTTCCTCTGATATATGGGCACTTGGGTGTACTTTAATCGAAATGGTCACCGGCGCTCCACCATGGCCCATCTCCGGCGACCCTGTTTCGGTGCTGTACCGGATCGGATATTCCGGCGAATCGCCGGCAATTCCGAGTTTTCTATCGGAGAAAGCGAAGGATTTTTTAAGGAAATGCTTGAGAAGGGACCCAACAGAAAGATGGAGCGCGAATCAACTTCTTGAACATCCATTTTTTGTGGAATTGAGTTCTGGGTCGGAGGAAATCAAGGAATTACATCCACATTCCGAATCTCCGACGAGTATTTTGGATCAAAGCCTCTGGAGTTTGTTAGAAGAAGAATCAGAAACTCTGTTGAAAACAGAGCAATGGGATGACGACGACGACGACGACAGAATCAAAGGGCTGGCGATGTTTTCAGGAGAAATTAAATGGGAATTGGGAGATGAGAATTGGATCACAATCAGAAGCTGTGTAGATAGTGAAGATGAAGAAGAATCCAGTTTTAGAAGAAATGATTTAGACTTAGTGGAACAGGAAAGAATAGGTAGTGGGAAAATCCAGTGTTTGGAATTGTTAGATAAAACAGTTAGCTTTAGAGTAAGGAAAAGTAATATTCTAATTAGTGAAATTAGTACCAACATTGGACAAATCTAA 1179 46.82 MAWTRRSAVGNGSSATVYLASIASSGELFAVKSAELLKSDFLKTEQRILSSLSHPSIVGYRGFDVTTENGKLMYNLFMEYVAGGTLTEEIVRRGGRIKEAAAAFYTRQIVRGLEYLHKQGLVHCDIKAKNILIGGDGLKIADFGCSKWVSETEAVISGTPMFMAPEVARGEKQGISSDIWALGCTLIEMVTGAPPWPISGDPVSVLYRIGYSGESPAIPSFLSEKAKDFLRKCLRRDPTERWSANQLLEHPFFVELSSGSEEIKELHPHSESPTSILDQSLWSLLEEESETLLKTEQWDDDDDDDRIKGLAMFSGEIKWELGDENWITIRSCVDSEDEEESSFRRNDLDLVEQERIGSGKIQCLELLDKTVSFRVRKSNILISEISTNIGQI 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1997652 1998830 - ClG42_02g0020800.10 Clacu02g0208 242276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0208 392 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Clacu02g0208 392 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524(InterPro)
Clacu02g0208 392 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0208 392 SUPERFAMILY Protein kinase-like (PK-like) 6 292 IPR011009 -
Clacu02g0208 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g0208 392 CDD STKc_MAPKKK 3 253 - -
Clacu02g0208 392 SMART serkin_6 3 253 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0208 392 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 253 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Clacu02g0208 392 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0208 Clacu-Chr2:1997652 Clacu03g0063 Clacu-Chr3:782369 5.70E-56 dispersed
Clacu08g0721 Clacu-Chr8:16971398 Clacu02g0208 Clacu-Chr2:1997652 2.20E-10 transposed
Clacu09g1090 Clacu-Chr9:10350225 Clacu02g0208 Clacu-Chr2:1997652 1.80E-85 transposed
Clacu01g2254 Clacu-Chr1:33679821 Clacu02g0208 Clacu-Chr2:1997652 2.90E-88 wgd
Clacu02g0208 Clacu-Chr2:1997652 Clacu02g0922 Clacu-Chr2:11740766 3.20E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73311 PF00069 Pkinase 1.30E-58 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0208 K20716 - csv:101205351 607.831