Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu02g0209 | ATGGACGCCGCCGCACCTTCCCCTTCCCCTCCTCTGCCTACTCCCACTCCCCTGCAATTTCCGGTTAACCTCAATTCCACCCTCCCCGATCCCAACTATTCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCGCCACCCCCTCCTCCTCCACCCTCCTCCTCCCACCGCCCCTTCTTCGACGAAATGAACTTCTTCCCCGCCGATGATAAATCCCGCGTCCTTCTCTCTGCCTCTCACTCCAATCTCACTCCCACCAAACTCGACTTCAATGTTAACACGGGATTGAATCTCTTGACCACGAATTCGTGTAGCGATCAATCCATGGTGGATGATGGAGTTTCACCAAACCCAGAAGAAAAAAGAATAAAAAACGAGAGAGCAGTTCTTCAAGCTGAATTGGAGAGGATAAACTCGGAGAATCTACGATTAAAAGACATGTTAAATCAAGTGACGAGCAATTACCAAACACTGCAGATGCAATTCAACACGCTAATTCAAACCCAGAAAACAGGGGACGCCGGTGACCCGGTTGAGGAAAACGCCGGCAGTGGCGGAGGGAATAATAATAATAATAATAATAATAATCATAATAATATTGGTAATAAGCTGGTGCCCAGGCAATTTATGGATCTTGGATTAGCGACCAATATGGAGAACGATGAGCCGTCAATGTCGTCGTCGGAAGGGAGGAGTGGAGACCGGTCCCGGTCGCCAGGAACCACCGGAGAAGTAGCGTCGTCGAAACGGCATAGCCCAGATCAATCTTCCAATTGGGGTTCCAATAATAACAACAGCAACAACAATAATAAAGTTCCAAAATTCAGTTCTTCTTCGGGTAAAGATGTGGATCAAACTGAAGCTACCATGAGAAAGGCTAGAGTCTCCGTTCGAGCCAGATCAGAAGCCCCCATGATAACAGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGCGAAGGGAAACCCTTGTCCACGAGCTTATTACCGGTGCACCATGGCCGCCGGCTGCCCAGTTAGAAAACAAGTACAAAGATGTGCAGAAGACAAAACAATTTTGATAACAACCTACGAAGGAAACCACAACCACCCATTGCCGCCGGCCGCCATGGCAATGGCTTCCACAACTTCATCGGCGGCCAGAATGCTTCTCTCAGGATCCATGTCAAGTGCAGATGGTTTAATGAACTCTAATTTTTTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACGATCTCAGCCTCAGCCCCATTTCCCACAGTCACATTGGACCTAACTCAAAACCCTAATCCTTTATTCCAACGCCCGGCTGCGGGTCACTTTCCTATCCCGTTTGCGGCCGGTCCGCCCCAAAGCTTCCCACAGATCTTCGGACATGCATTATACAATCAATCAAAATTCTCAGGCCTTCAAATGTCAAAGGATATTGAAGCACCACCACCTCCACCACCGCAGAATCCATTGGCCGACACGTTGAGTGCTGCGGGTGTAGCAATTGCATCCGACCCGAATTTCATTGCGGCATTGGCAACGGCAATGACGTCGCTGATCGGCGGATCGCATCATCAGAATGAGAATGGTAATGGCAGTAGTAATGTTGATAACAATACAAATAGCAACTCCCAACAGTAA | 1638 | 48.53 | MDAAAPSPSPPLPTPTPLQFPVNLNSTLPDPNYSPPPPPPPPPPPPPPPPPSSSHRPFFDEMNFFPADDKSRVLLSASHSNLTPTKLDFNVNTGLNLLTTNSCSDQSMVDDGVSPNPEEKRIKNERAVLQAELERINSENLRLKDMLNQVTSNYQTLQMQFNTLIQTQKTGDAGDPVEENAGSGGGNNNNNNNNNHNNIGNKLVPRQFMDLGLATNMENDEPSMSSSEGRSGDRSRSPGTTGEVASSKRHSPDQSSNWGSNNNNSNNNNKVPKFSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQNPNPLFQRPAAGHFPIPFAAGPPQSFPQIFGHALYNQSKFSGLQMSKDIEAPPPPPPQNPLADTLSAAGVAIASDPNFIAALATAMTSLIGGSHHQNENGNGSSNVDNNTNSNSQQ | 545 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2011659 | 2014654 | - | ClG42_02g0020900.10 | Clacu02g0209 | 242277 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu02g0209 | 545 | MobiDBLite | consensus disorder prediction | 182 | 202 | - | - | |
Clacu02g0209 | 545 | ProSiteProfiles | WRKY domain profile. | 300 | 366 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu02g0209 | 545 | SUPERFAMILY | WRKY DNA-binding domain | 298 | 366 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu02g0209 | 545 | FunFam | probable WRKY transcription factor 31 | 290 | 367 | - | - | |
Clacu02g0209 | 545 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 40 | 46 | - | - | |
Clacu02g0209 | 545 | SMART | WRKY_cls | 305 | 365 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu02g0209 | 545 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 109 | 526 | IPR044810 | GO:0003700(InterPro) | |
Clacu02g0209 | 545 | MobiDBLite | consensus disorder prediction | 522 | 545 | - | - | |
Clacu02g0209 | 545 | Coils | Coil | 119 | 153 | - | - | |
Clacu02g0209 | 545 | Gene3D | WRKY domain | 290 | 367 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu02g0209 | 545 | MobiDBLite | consensus disorder prediction | 217 | 299 | - | - | |
Clacu02g0209 | 545 | Pfam | WRKY DNA -binding domain | 307 | 364 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Clacu02g0209 | 545 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Clacu02g0209 | 545 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Clacu02g0209 | 545 | MobiDBLite | consensus disorder prediction | 30 | 55 | - | - | |
Clacu02g0209 | 545 | MobiDBLite | consensus disorder prediction | 218 | 283 | - | - | |
Clacu02g0209 | 545 | MobiDBLite | consensus disorder prediction | 168 | 202 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g0209 | Clacu-Chr2:2011659 | Clacu05g1143 | Clacu-Chr5:10493681 | 2.50E-41 | dispersed | |
Clacu01g2251 | Clacu-Chr1:33655052 | Clacu02g0209 | Clacu-Chr2:2011659 | 4.00E-112 | wgd | |
Clacu10g2214 | Clacu-Chr10:35149086 | Clacu02g0209 | Clacu-Chr2:2011659 | 6.20E-22 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47175 | PF03106 | WRKY | 2.50E-24 | CL0274 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu02g0209 | - | - | - | 0.0 |