Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0219 ATGGATCAGAGAGAGGAAGAGCCAAAAATTGGCATTTCCAATATTACCGCCGTCACTACTAGACCGGTGGTAGAAGACAGTTGTTCTGACGACCCAAATTTTCTGCCAAAAATCTTCTTCGCGAAGAGCCCGCGAGAATTTTTCAACCATTCGGCAACTTCACAGTCCTTTGATCAAACAACAAATCAGCACACGAAGCTTCATCCCAATTGGATACTAATTCAATTCCATTCCCATATTAAAAATGTAAGCCGTCGTGTTTTACCAGCTCTAGAATTGCTCATTTCCAACCCAGTGAAAAATATCAAGTTGAACCCTCAATTTTCAGTCAACGGGGTCCTCTGTACACGGCAAAGCAACCAGGTGCTCAATTGGAAGCGAAATTTGGTTCATCTCTTCTTAGAATCCTGTTTTCTCATCTGGGTCTTCCTCGTTTTGGTCGATTTTGGGGTTTGTTTAGTCCAAATGAGCCCTCGATTTGGGTTTTTGTTGTTGTTTTTGTTCTCTGTTTTACTGGGAGCTGATTCAAAGTGCCCTAGAACATGCGATGTAGCTTTAGGTTCGTACTTTGTGTGGGAGGGTAGTACTTTGTCTCTCATCTCTCAAATGTTTCGGTTGCCGTCTCCTGATATAATCGTCAGCTACAATAGAGATAAAATTCCCAACAAAGACAGTGTTAATAGCGGCATCAGAATCAACGTTCCATTCTCCTGTGACTGTATTAGCGATACGTTTCTGGGTCATACGTTTCAGTACCAGATTAATAGTGGAGATACTTACAGTGAAATTGCGACCAAATTCTATTCGAACCTGACTACGGTGGACATGTTACAAAAATTCAATAATTTTGATGTTCTTAATCTTCCTCCAAATGGTATTTTGAATGTGGTAGTGAACTGCTCCTGTGGGAATCCTGATGTTTCCAAGACATATGGGCTGTTTGTCACTTACCCAATTCGATCCGATGATAGTTGGGATAAGTTGCAAACAGATACAAATGTCAGCTTGTCTTTGCTGCAGCAGTACAATCAGGGTGTGAATTTCAGCCCAGGGAATTTGATCTTTATTCCAGGCAGAGATAAAAGTGGCAACTATCCACCTCTGAATATTAGGACTTGCAGGAGAAAGTTGAAAAGTTCTAAATTGCTGGCGTTCTCCCAAGAACTGTCTTCTCAAGATGGGCGCGCTCTTGCCCCTGGAAGTTCGTTAGATAAATCTACTGAATCAAATGGTCAAGGTGGTGGTATAGCTGCCGTTACCGGTATTACTGTGGACAAATCAGTGGATTTCTCATATGAAGAGCTTGCCAAGGCCACGGACAACTTTAGCTTGGCTAACAAAATCGGTGAAGGTGGTTTCGGATCGGTTTACTATGCAGAACTCAGAGGAGAGAAAGCTGCAATAAAGAAGATGGACATGCAAGCTTCAAGGGAGTTCCTTGCAGAAATTAAGGTTCTAACACGCGTTCACCACTTGAACTTGGTGCGCTTGATAGGATATTGTGTTGAGAATTCTCTATTCCTAGTCTATGAGTACATTGAGAATGGCAACTTGAGCCAACATTTACGTGGCACTGGTCGGGATCCATTGCCGTGGCCTTCTAGGGTCCAAATAGCCCTCGATTCAGCTCGTGGCCTTGAGTATATCCATGAGCACACTGTTCCCGTTTATATTCATCGTGATATTAAATCCGCCAACATATTGATTGACAAAAATTTTCATGGAAAGGTTGCAGACTTTGGGCTAACCAAGTTAACTGAAGTTGGAAATTCTTCGCTTCCTACTCGTCTTGTGGGCACATTTGGATATATGCCACCCGAATATGCACAGTACGGTGATGTTTCTCCAAAGATAGATGTATATGCTTTTGGTGTTGTTCTTTATGAGCTTATTTCAGCCAAGGAAGCTGTGGTTAAGACGAACAAACCCAGTGCAATCAATGAATCAAAAGGCCTTGTCGCTTTGTTTGAAGATGTCCTGAATCAACCCGACGCAAAAGAGAACCTTCACAAACTAGTCGACCCAAGACTCGAAGAGAACTACCCTCTCGATTCGGTTTTCAAGATGGCTCAACTTGCCAAGGCATGTACACATGAGAATCCACAGCTACGGCCAAGCATGAGATCCATTGTGGTTGCTCTCATGACACTTTCTTCTGCGACAGAGGATTGGGACGTCGGCTCTTTCTATGAAAACCAAGCTCTCGTAAACTTGATGTCGGGAAGGTAG 2229 42.93 MDQREEEPKIGISNITAVTTRPVVEDSCSDDPNFLPKIFFAKSPREFFNHSATSQSFDQTTNQHTKLHPNWILIQFHSHIKNVSRRVLPALELLISNPVKNIKLNPQFSVNGVLCTRQSNQVLNWKRNLVHLFLESCFLIWVFLVLVDFGVCLVQMSPRFGFLLLFLFSVLLGADSKCPRTCDVALGSYFVWEGSTLSLISQMFRLPSPDIIVSYNRDKIPNKDSVNSGIRINVPFSCDCISDTFLGHTFQYQINSGDTYSEIATKFYSNLTTVDMLQKFNNFDVLNLPPNGILNVVVNCSCGNPDVSKTYGLFVTYPIRSDDSWDKLQTDTNVSLSLLQQYNQGVNFSPGNLIFIPGRDKSGNYPPLNIRTCRRKLKSSKLLAFSQELSSQDGRALAPGSSLDKSTESNGQGGGIAAVTGITVDKSVDFSYEELAKATDNFSLANKIGEGGFGSVYYAELRGEKAAIKKMDMQASREFLAEIKVLTRVHHLNLVRLIGYCVENSLFLVYEYIENGNLSQHLRGTGRDPLPWPSRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEVGNSSLPTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAVVKTNKPSAINESKGLVALFEDVLNQPDAKENLHKLVDPRLEENYPLDSVFKMAQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVNLMSGR 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2078067 2083838 - ClG42_02g0021900.10 Clacu02g0219 242287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0219 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 557 569 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g0219 742 Gene3D Phosphorylase Kinase; domain 1 428 512 - -
Clacu02g0219 742 CDD STKc_IRAK 448 711 - -
Clacu02g0219 742 Pfam LysM domain 252 291 IPR018392 -
Clacu02g0219 742 Pfam Protein tyrosine and serine/threonine kinase 444 713 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu02g0219 742 FunFam LysM receptor kinase 2 421 512 - -
Clacu02g0219 742 SMART serkin_6 442 716 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0219 742 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 163 741 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Clacu02g0219 742 ProSiteProfiles Protein kinase domain profile. 442 717 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu02g0219 742 ProSitePatterns Protein kinases ATP-binding region signature. 448 470 IPR017441 GO:0005524(InterPro)
Clacu02g0219 742 FunFam PTI1-like tyrosine-protein kinase 3 513 728 - -
Clacu02g0219 742 SUPERFAMILY Protein kinase-like (PK-like) 426 714 IPR011009 -
Clacu02g0219 742 Gene3D Transferase(Phosphotransferase) domain 1 513 733 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0219 Clacu-Chr2:2078067 Clacu05g2760 Clacu-Chr5:35029126 1.50E-78 dispersed
Clacu02g0219 Clacu-Chr2:2078067 Clacu11g0675 Clacu-Chr11:6517974 5.70E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73312 PF00069 Pkinase 9.50E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0219 K13429 - csv:101203576 1052.74