Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0227 ATGGAAGGAGGAGGATCCAGTGGAAGCAGCTGTTCATTCATGGCTACTTGTAACAGCACCAACAACAATAATACTAACACACCCATGATGATGATGATCAATAGTACTAATAATCCTCAAACGTTGGACAACAATAACAACAACAACAACAACAACAAGATGTTCTTGCCTTTGTCTTGGTCTTCTACTTCTTCCAACAATAATGCTCAAACTCAAAGGGTTTCTGCTTTTGTTCCTCAATCTAATACCAATAATAATGATCTTCTTACCACTTCCACTTCCAAAGCTAAAATTATGGCTCATCCTCTCTTCCCTCGCCTCCTCGCTGCCTACGTCAACTGCCAAAAGGTGGGTGCGCCGCCGGAAGTGGTGGCGAGGCTAGAGCAGGCGTGTGCCGTGGCGACGGGAAGCTGTAGGGCGGCGGGACGTGGGGATGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAACCTTTTAAAGAAGCAATGCTCTTCTTCTCAAGAATTGAGTCTCAGCTGAAAACCCTAGCAGTTTCTTCTGATGGTTTCGAGTTGGTTGGGCAAAACGAGTGCTCGAAGGAGATTGAGGTGGATATGAACGAAAACTACATAGACCCTCAAGCCGAAGAGAAGGAACTCAAAGGCCAACTTCTACGCAAATACAGCGGATATCTTGGGAGCCTAAAACAAGAGTTTTTGAAGAAGAAAAAGAATGGGAAGTTGCCAAAAGAAGCTAGACAACAATTGCTCGACTGGTGGAGTCGACACTACAAATGGCCATATCCCTCGGAGTCGCAAAAGGTGGCGTTGGCGGAGTCGACGGGGCTAGACTTGAAGCAGATCAATAATTGGTTTATTAACCAAAGAAAGCGCCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACATTACTATTTGGACAATGTCATATGCAATCCTTTCTCTATGGATTGTTCTTCTACTCTTTTCTGA 1029 44.8 MEGGGSSGSSCSFMATCNSTNNNNTNTPMMMMINSTNNPQTLDNNNNNNNNNKMFLPLSWSSTSSNNNAQTQRVSAFVPQSNTNNNDLLTTSTSKAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGRGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKTLAVSSDGFELVGQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2135320 2139238 - ClG42_02g0022700.10 Clacu02g0227 242295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0227 342 Gene3D - 249 311 - -
Clacu02g0227 342 SUPERFAMILY Homeodomain-like 246 321 IPR009057 -
Clacu02g0227 342 SMART HOX_1 246 311 IPR001356 GO:0003677(InterPro)
Clacu02g0227 342 SMART KNOX2_2 139 190 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu02g0227 342 Pfam KNOX1 domain 95 132 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu02g0227 342 SMART ELK_2 224 245 IPR005539 GO:0003677(InterPro)
Clacu02g0227 342 ProSiteProfiles 'Homeobox' domain profile. 244 307 IPR001356 GO:0003677(InterPro)
Clacu02g0227 342 MobiDBLite consensus disorder prediction 37 68 - -
Clacu02g0227 342 CDD homeodomain 256 308 IPR001356 GO:0003677(InterPro)
Clacu02g0227 342 FunFam Homeobox protein knotted-1-like 2 249 311 - -
Clacu02g0227 342 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 66 314 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu02g0227 342 Pfam KNOX2 domain 144 188 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Clacu02g0227 342 Pfam Homeobox KN domain 264 303 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu02g0227 342 ProSiteProfiles ELK domain profile. 224 244 IPR005539 GO:0003677(InterPro)
Clacu02g0227 342 ProSitePatterns 'Homeobox' domain signature. 282 305 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu02g0227 342 Pfam ELK domain 224 245 IPR005539 GO:0003677(InterPro)
Clacu02g0227 342 SMART KNOX1_2 92 136 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0227 Clacu-Chr2:2135320 Clacu05g1924 Clacu-Chr5:28447496 1.70E-72 dispersed
Clacu01g2242 Clacu-Chr1:33593647 Clacu02g0227 Clacu-Chr2:2135320 2.20E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47178 PF03791 KNOX2 6.20E-22 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0227 - - - 0.0