Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu02g0228 | ATGGCACAGTTGCCACCCAAAATCCCAAATATGACGCCTAATTGGCCCGACTTTTCCCGGCAGAAAATCCCTTCAATGGAAACCTTTGCACCGCCCACCACCACGCCGGCGGTTACTCAAAATAATCCTTCTTGGGTCGATGAATTTCTCGATTTTTCTTCTGCTAGACGTGGATCCCACCGTCGGTCTGTTAGTGATTCCATCACATTCCTCGAAATGCCAATGCTCGAGGAAGATTGCCGGACTGCCGCTGCTGCACCGCCCCCGCCGCCCCCGGGATCCGGTGACCGGAATGAATTTGATAGATTCGATGACGAGCAATTCCTGTCGATGTTTAACGATGAAATCTCCGCCGCCGTCGCTCCCACCTTGTCGTCGTCGAACCCCTCCACGCCGTCGGATCATAATAGTATTAACGACGAGAAAGACGCCCAAAACGACGGTAAGCAAAATCAGAACAAAAACGAATCCGACGAAGTACAGAGCCAACAGCAATCGGAAAACCAAACACAATCCAATTCCATGGCGACGGCGGCAACGGCGGCTTCCACTGATCGGATAACAGACCCCAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCACAAAGATCACGAGTAAGGAAGCTTCAATACATATCAGAACTCGAACGAAGCGTTACATCGTTACAGGCTGAAGTATCGGTGCTATCGCCGCGAGTGGCGTTTTTGGACCACCAGAGATTGCTTCTTAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCATTAAAAAGGGAGATAGAGAGACTAAGACAGATCAAAACGAGCAAGTTCCGAACATCGTCGTTTAGGGAAAGGGACCACTTTCAAAAGCCCTTCCATGATTGA | 918 | 49.46 | MAQLPPKIPNMTPNWPDFSRQKIPSMETFAPPTTTPAVTQNNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEEDCRTAAAAPPPPPPGSGDRNEFDRFDDEQFLSMFNDEISAAVAPTLSSSNPSTPSDHNSINDEKDAQNDGKQNQNKNESDEVQSQQQSENQTQSNSMATAATAASTDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQIKTSKFRTSSFRERDHFQKPFHD | 305 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2166769 | 2170093 | - | ClG42_02g0022800.10 | Clacu02g0228 | 242296 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu02g0228 | 305 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Clacu02g0228 | 305 | SMART | brlzneu | 187 | 251 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu02g0228 | 305 | SUPERFAMILY | Leucine zipper domain | 191 | 245 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu02g0228 | 305 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 189 | 241 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu02g0228 | 305 | PANTHER | BASIC LEUCINE ZIPPER 34 | 1 | 285 | IPR052483 | GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER) | |
Clacu02g0228 | 305 | CDD | bZIP_plant_RF2 | 192 | 242 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu02g0228 | 305 | FunFam | Basic leucine zipper 61 | 190 | 263 | - | - | |
Clacu02g0228 | 305 | MobiDBLite | consensus disorder prediction | 136 | 154 | - | - | |
Clacu02g0228 | 305 | MobiDBLite | consensus disorder prediction | 122 | 193 | - | - | |
Clacu02g0228 | 305 | MobiDBLite | consensus disorder prediction | 79 | 101 | - | - | |
Clacu02g0228 | 305 | Pfam | Basic region leucine zipper | 188 | 236 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu02g0228 | 305 | MobiDBLite | consensus disorder prediction | 155 | 184 | - | - | |
Clacu02g0228 | 305 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 194 | 209 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu02g0228 | 305 | Gene3D | - | 190 | 262 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu02g0228 | Clacu-Chr2:2166769 | Clacu11g1956 | Clacu-Chr11:30534716 | 5.80E-48 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
47179 | PF07716 | bZIP_2 | 3.50E-09 | CL0018 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu02g0228 | - | - | - | 0.0 |