Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0228 ATGGCACAGTTGCCACCCAAAATCCCAAATATGACGCCTAATTGGCCCGACTTTTCCCGGCAGAAAATCCCTTCAATGGAAACCTTTGCACCGCCCACCACCACGCCGGCGGTTACTCAAAATAATCCTTCTTGGGTCGATGAATTTCTCGATTTTTCTTCTGCTAGACGTGGATCCCACCGTCGGTCTGTTAGTGATTCCATCACATTCCTCGAAATGCCAATGCTCGAGGAAGATTGCCGGACTGCCGCTGCTGCACCGCCCCCGCCGCCCCCGGGATCCGGTGACCGGAATGAATTTGATAGATTCGATGACGAGCAATTCCTGTCGATGTTTAACGATGAAATCTCCGCCGCCGTCGCTCCCACCTTGTCGTCGTCGAACCCCTCCACGCCGTCGGATCATAATAGTATTAACGACGAGAAAGACGCCCAAAACGACGGTAAGCAAAATCAGAACAAAAACGAATCCGACGAAGTACAGAGCCAACAGCAATCGGAAAACCAAACACAATCCAATTCCATGGCGACGGCGGCAACGGCGGCTTCCACTGATCGGATAACAGACCCCAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCACAAAGATCACGAGTAAGGAAGCTTCAATACATATCAGAACTCGAACGAAGCGTTACATCGTTACAGGCTGAAGTATCGGTGCTATCGCCGCGAGTGGCGTTTTTGGACCACCAGAGATTGCTTCTTAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCATTAAAAAGGGAGATAGAGAGACTAAGACAGATCAAAACGAGCAAGTTCCGAACATCGTCGTTTAGGGAAAGGGACCACTTTCAAAAGCCCTTCCATGATTGA 918 49.46 MAQLPPKIPNMTPNWPDFSRQKIPSMETFAPPTTTPAVTQNNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEEDCRTAAAAPPPPPPGSGDRNEFDRFDDEQFLSMFNDEISAAVAPTLSSSNPSTPSDHNSINDEKDAQNDGKQNQNKNESDEVQSQQQSENQTQSNSMATAATAASTDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQIKTSKFRTSSFRERDHFQKPFHD 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2166769 2170093 - ClG42_02g0022800.10 Clacu02g0228 242296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0228 305 MobiDBLite consensus disorder prediction 1 21 - -
Clacu02g0228 305 SMART brlzneu 187 251 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0228 305 SUPERFAMILY Leucine zipper domain 191 245 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0228 305 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 189 241 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0228 305 PANTHER BASIC LEUCINE ZIPPER 34 1 285 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Clacu02g0228 305 CDD bZIP_plant_RF2 192 242 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0228 305 FunFam Basic leucine zipper 61 190 263 - -
Clacu02g0228 305 MobiDBLite consensus disorder prediction 136 154 - -
Clacu02g0228 305 MobiDBLite consensus disorder prediction 122 193 - -
Clacu02g0228 305 MobiDBLite consensus disorder prediction 79 101 - -
Clacu02g0228 305 Pfam Basic region leucine zipper 188 236 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0228 305 MobiDBLite consensus disorder prediction 155 184 - -
Clacu02g0228 305 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 194 209 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu02g0228 305 Gene3D - 190 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0228 Clacu-Chr2:2166769 Clacu11g1956 Clacu-Chr11:30534716 5.80E-48 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47179 PF07716 bZIP_2 3.50E-09 CL0018 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0228 - - - 0.0