Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu02g0239 ATGTCTGAAGAGCAAGCAATTTCAAATGCCTTCATTTGCAGCATCCCATCACTTGGATCCATCAACAACCCTTCTGTTGTCAAGAAGAAGAGGAATCTCCCTGGAAATCCAGATCCCGAAGCGGAAGTTGTGTCGTTGTCGCCTAAGACGCTAATGGCGACGAACCGATTCTTGTGTGAGATATGTGGGAAGGGTTTTCAAAGGGATCAAAACCTACAACTGCATAGGAGAGGGCACAATCTTCCATGGAAGCTAAAGCAAAGAAGCAATGGAAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTACATCACCATCCTTCAAGGGCTCTTGGAGATCTCACAGGAATTAAAAAGCACTTTTGCAGGAAGCATGGGGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGTACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGATAGCTATGTAACTCACAGAGCATATTGTGTAGCATTAGCAGAAGAAACAGCAAGATTAAATGCAGCATCAACCATGGCCAACAACAGCAACAATTCAATGGCTGATAGTTACAACAACTACCATTTCCTAAAGCCCACAAACAACAATAATCCTCCACAATTCTTCCCTTCCTCCAACTTTTTCAAACCAGATGAAACTTCCCATATGTTCCTCAATAACATTAATAATGTTACTCCCACAATAGGACTCCCCTTTTGGATGGCTACAAATTCTCACCAAATCAATTTCCCTCACTCACTACTTCCTCAACAAACAACAACAACAACAACAACAAATTCTGATGTTCTTTCTGTTCCTTCCTTATACAGCAATGAAGAACAACAATCATCCCATCAATTTATGGCTTCATCAGCCAACATGTCAGCTACTGTTTTGCTGCAAAAGGCTGCACAAATTGGAGTGACAACCTCCACAACAGACCCATCATTGATGGAAAGTTTTGGGTTGAAATTCAGTACAATAACTGATGGGAAAGCCTTGTTTTCAGGGCTTTATGGCTCAATAATGAACTCAAACTCCAACATTATTCCTAGTTGTTGTAGCCTTGAAAATGGTGGAGATCATCATCAGGACTCTGAAATATACTCTGCACCAGCAAAGAGAATGAGACACACTGTTAGTGAAGAGAGTGTTACTGGTGGAGAAGGAGAAACAAGGGATTTCTTGGGTGTGGGAATGCACTCCATATGCCATCCATCACCAGTAAATGGATGGATCTGA 1302 41.63 MSEEQAISNAFICSIPSLGSINNPSVVKKKRNLPGNPDPEAEVVSLSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNGNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCVALAEETARLNAASTMANNSNNSMADSYNNYHFLKPTNNNNPPQFFPSSNFFKPDETSHMFLNNINNVTPTIGLPFWMATNSHQINFPHSLLPQQTTTTTTTNSDVLSVPSLYSNEEQQSSHQFMASSANMSATVLLQKAAQIGVTTSTTDPSLMESFGLKFSTITDGKALFSGLYGSIMNSNSNIIPSCCSLENGGDHHQDSEIYSAPAKRMRHTVSEESVTGGEGETRDFLGVGMHSICHPSPVNGWI 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2255961 2258894 + ClG42_02g0023900.10 Clacu02g0239 242307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu02g0239 433 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 161 200 - -
Clacu02g0239 433 FunFam protein indeterminate-domain 12-like 36 106 - -
Clacu02g0239 433 Gene3D Classic Zinc Finger 53 80 - -
Clacu02g0239 433 Gene3D Classic Zinc Finger 91 183 - -
Clacu02g0239 433 FunFam protein indeterminate-domain 5, chloroplastic-like 113 192 - -
Clacu02g0239 433 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 422 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Clacu02g0239 433 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Clacu02g0239 433 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Clacu02g0239 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Clacu02g0239 433 SUPERFAMILY beta-beta-alpha zinc fingers 56 155 IPR036236 -
Clacu02g0239 433 SMART c2h2final6 57 79 IPR013087 -
Clacu02g0239 433 SMART c2h2final6 135 155 IPR013087 -
Clacu02g0239 433 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Clacu02g0239 433 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 134 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0239 Clacu-Chr2:2255961 Clacu02g1062 Clacu-Chr2:18229211 8.40E-101 dispersed
Clacu02g0239 Clacu-Chr2:2255961 Clacu04g0935 Clacu-Chr4:23612608 3.80E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
47180 PF00096 zf-C2H2 0.014 CL0361 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu02g0239 K25870 - csv:101207997 650.203